miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 26522 0.66 0.89873
Target:  5'- gCCCAGCCUUcaGACUAUCAa--ACCUa -3'
miRNA:   3'- aGGGUCGGAG--UUGGUAGUcagUGGGc -5'
33416 5' -56.2 NC_007605.1 + 28844 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 28917 0.66 0.916314
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU-------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 29106 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 31985 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 32175 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 32893 0.8 0.239468
Target:  5'- uUCCgGGCCUCAGCCAUCG---GCCCGg -3'
miRNA:   3'- -AGGgUCGGAGUUGGUAGUcagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 34019 0.67 0.890222
Target:  5'- aUCCCAGCCacuACCAuagcccccaccacaUUAGUCuCCCa -3'
miRNA:   3'- -AGGGUCGGaguUGGU--------------AGUCAGuGGGc -5'
33416 5' -56.2 NC_007605.1 + 34981 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 35054 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 35244 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 36568 0.68 0.832455
Target:  5'- -gCCGGaCCUgAGCCA--GGUCACCCu -3'
miRNA:   3'- agGGUC-GGAgUUGGUagUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 36978 0.72 0.591957
Target:  5'- gCCCAGCgUCAggaaguacaGCCGgucgUAGUCAUCCGa -3'
miRNA:   3'- aGGGUCGgAGU---------UGGUa---GUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 39539 0.69 0.770716
Target:  5'- gCCCaggggAGCC-CAGCCAcCAG-CACCCGc -3'
miRNA:   3'- aGGG-----UCGGaGUUGGUaGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 41087 0.66 0.911066
Target:  5'- -gCCAGCCUCAGCgAgguuaAGcugCACCUGg -3'
miRNA:   3'- agGGUCGGAGUUGgUag---UCa--GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 43691 0.7 0.742263
Target:  5'- gCCCAGCUUgGGCac-CuGUCGCCCGa -3'
miRNA:   3'- aGGGUCGGAgUUGguaGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 48192 0.66 0.916886
Target:  5'- gCCCAGUCUCAcGCCAgcgagcUCGaUC-CCCGg -3'
miRNA:   3'- aGGGUCGGAGU-UGGU------AGUcAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 48581 0.7 0.703043
Target:  5'- aUCCCAcGCCUCcaGACCGgu-GUCugGCCCGg -3'
miRNA:   3'- -AGGGU-CGGAG--UUGGUaguCAG--UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 54045 0.71 0.683044
Target:  5'- gCCCGGaCCUCGGCCGccucggccUCGGUCAgcagcUCCGa -3'
miRNA:   3'- aGGGUC-GGAGUUGGU--------AGUCAGU-----GGGC- -5'
33416 5' -56.2 NC_007605.1 + 54174 0.68 0.848602
Target:  5'- -gCCAGCCUgGGCgGggCGGUUGCCUGg -3'
miRNA:   3'- agGGUCGGAgUUGgUa-GUCAGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.