Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33416 | 5' | -56.2 | NC_007605.1 | + | 55351 | 0.68 | 0.840622 |
Target: 5'- cUCCAGCgUCAGCC---GGUUGCCCa -3' miRNA: 3'- aGGGUCGgAGUUGGuagUCAGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 61313 | 0.67 | 0.892219 |
Target: 5'- gCCCuucGCCUgGAUCugCAGUCGCUCGg -3' miRNA: 3'- aGGGu--CGGAgUUGGuaGUCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 61504 | 0.74 | 0.522397 |
Target: 5'- cCUCGGCCUCcGCCcgCAGguaggcCGCCCGg -3' miRNA: 3'- aGGGUCGGAGuUGGuaGUCa-----GUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 65359 | 0.76 | 0.386495 |
Target: 5'- gCCCucCCUCGACUcUCAGUCACCCu -3' miRNA: 3'- aGGGucGGAGUUGGuAGUCAGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 65386 | 0.67 | 0.878529 |
Target: 5'- cUUCCAGCCUCucuuuCCAgcacaggUGGUCugCCa -3' miRNA: 3'- -AGGGUCGGAGuu---GGUa------GUCAGugGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 66387 | 0.66 | 0.916886 |
Target: 5'- aCUCgggGGCCUCuacACCG-CcGUCACCCGg -3' miRNA: 3'- aGGG---UCGGAGu--UGGUaGuCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 76417 | 0.67 | 0.892219 |
Target: 5'- gUCauuaUAGCCUCAGCCAUC---UACCUGa -3' miRNA: 3'- -AGg---GUCGGAGUUGGUAGucaGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 96713 | 0.68 | 0.848602 |
Target: 5'- gUCCCAGUagUCAGUCAUCA-UCAUCCGg -3' miRNA: 3'- -AGGGUCGg-AGUUGGUAGUcAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 99077 | 0.67 | 0.892219 |
Target: 5'- gUCUUAGCCggCAGCUgcgccucuuuGUCuGUCAUCCGg -3' miRNA: 3'- -AGGGUCGGa-GUUGG----------UAGuCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 100204 | 0.7 | 0.722806 |
Target: 5'- gCCCAGCUcCAucCCAgCAGUCACCUc -3' miRNA: 3'- aGGGUCGGaGUu-GGUaGUCAGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 103936 | 0.68 | 0.82411 |
Target: 5'- cUCCauaGGCCUCuGCCGggaggugcUgGGUCGCCUGa -3' miRNA: 3'- -AGGg--UCGGAGuUGGU--------AgUCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 104844 | 0.66 | 0.927823 |
Target: 5'- aUCCC--CCUgAaagaugGCCAUCAGUaggCACCCGg -3' miRNA: 3'- -AGGGucGGAgU------UGGUAGUCA---GUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 108319 | 0.67 | 0.871358 |
Target: 5'- cCCCAccuGCCUCGACCcgggCGGcuaCACCCc -3' miRNA: 3'- aGGGU---CGGAGUUGGua--GUCa--GUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 109067 | 0.66 | 0.904395 |
Target: 5'- uUCCaGGCCUCAuCCugcGUCaacagauAGUCACCCu -3' miRNA: 3'- -AGGgUCGGAGUuGG---UAG-------UCAGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 109081 | 0.69 | 0.798076 |
Target: 5'- cUUCGGCCUCGGCCAUCuGgaggCgGCCCu -3' miRNA: 3'- aGGGUCGGAGUUGGUAGuCa---G-UGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 113919 | 0.73 | 0.551898 |
Target: 5'- -gCCAGUCUCAACUAucgcuccuUCAGUCACuCCa -3' miRNA: 3'- agGGUCGGAGUUGGU--------AGUCAGUG-GGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 114150 | 0.68 | 0.840622 |
Target: 5'- --gCAGCC-CAcGCCAUCAGcCGCCCc -3' miRNA: 3'- aggGUCGGaGU-UGGUAGUCaGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 114201 | 0.73 | 0.581883 |
Target: 5'- --gCAGCCcCcGCCAUCAGcCGCCCGg -3' miRNA: 3'- aggGUCGGaGuUGGUAGUCaGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 117716 | 0.69 | 0.798076 |
Target: 5'- -gCCAGCCUUucuGCCAgucaGGUCACCg- -3' miRNA: 3'- agGGUCGGAGu--UGGUag--UCAGUGGgc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 118552 | 0.69 | 0.789092 |
Target: 5'- aCCCGGCCUaCGucuCCG-CAGaCACCCa -3' miRNA: 3'- aGGGUCGGA-GUu--GGUaGUCaGUGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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