miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 152909 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 153057 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 153242 0.66 0.916886
Target:  5'- gCCgGGuCCUCGGCCAUCuccgucuuucUCGCCCc -3'
miRNA:   3'- aGGgUC-GGAGUUGGUAGuc--------AGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 155978 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 156126 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 159047 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 159195 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 160038 0.67 0.885485
Target:  5'- gCCCGGCCUCGccuucuccucaGCCuccaaCAGgUGCCCGa -3'
miRNA:   3'- aGGGUCGGAGU-----------UGGua---GUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 164314 0.7 0.751854
Target:  5'- gCCCAGCCUCGcaaACCAg-AGUCugCg- -3'
miRNA:   3'- aGGGUCGGAGU---UGGUagUCAGugGgc -5'
33416 5' -56.2 NC_007605.1 + 164722 0.69 0.798076
Target:  5'- aCCCAcGCCUCGACCGg-GGUC-CUCa -3'
miRNA:   3'- aGGGU-CGGAGUUGGUagUCAGuGGGc -5'
33416 5' -56.2 NC_007605.1 + 167221 0.73 0.571843
Target:  5'- gCCCGGCCagGGCCAUCuccaccaggcaGGUCACCa- -3'
miRNA:   3'- aGGGUCGGagUUGGUAG-----------UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 169293 0.71 0.693068
Target:  5'- gUCCGGCCUCGugUcagCGGUCucugGCCCGg -3'
miRNA:   3'- aGGGUCGGAGUugGua-GUCAG----UGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.