miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 140781 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 140634 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 137565 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 133809 0.69 0.761341
Target:  5'- aUCgCCGaCCUCAagGCCA--AGUCACCCGg -3'
miRNA:   3'- -AG-GGUcGGAGU--UGGUagUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 133352 0.74 0.532167
Target:  5'- cCCCAGCC-CAGCCGuucacUCGGcUCACCgGg -3'
miRNA:   3'- aGGGUCGGaGUUGGU-----AGUC-AGUGGgC- -5'
33416 5' -56.2 NC_007605.1 + 130028 0.67 0.859448
Target:  5'- -aCCAGgCUCAACaCAugcucaucucccuucUCGGUCACUCGc -3'
miRNA:   3'- agGGUCgGAGUUG-GU---------------AGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 128928 0.66 0.905013
Target:  5'- gCCgAGCCUCgGACCucaCGGUCACUa- -3'
miRNA:   3'- aGGgUCGGAG-UUGGua-GUCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 125122 0.71 0.693068
Target:  5'- cCCUGGCCUgCAACCG-CAGccCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUUGGUaGUCa-GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 123930 0.67 0.871358
Target:  5'- gCCCAGCUUgaugacggCGGCUgagAUCGG-CACCCGg -3'
miRNA:   3'- aGGGUCGGA--------GUUGG---UAGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 120960 0.69 0.810404
Target:  5'- aCCC-GCCUCcccacGGCCGUCGGgcugcgaccccgugCGCCCGu -3'
miRNA:   3'- aGGGuCGGAG-----UUGGUAGUCa-------------GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118681 0.66 0.911066
Target:  5'- cUCCCGGCCUCuuUUAUagcUAGUCuccacACCCa -3'
miRNA:   3'- -AGGGUCGGAGuuGGUA---GUCAG-----UGGGc -5'
33416 5' -56.2 NC_007605.1 + 118669 0.69 0.796291
Target:  5'- cCCCAGCCggacgcccccaAGCUAUUGGUCcCCCGc -3'
miRNA:   3'- aGGGUCGGag---------UUGGUAGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118552 0.69 0.789092
Target:  5'- aCCCGGCCUaCGucuCCG-CAGaCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUu--GGUaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 117716 0.69 0.798076
Target:  5'- -gCCAGCCUUucuGCCAgucaGGUCACCg- -3'
miRNA:   3'- agGGUCGGAGu--UGGUag--UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 114201 0.73 0.581883
Target:  5'- --gCAGCCcCcGCCAUCAGcCGCCCGg -3'
miRNA:   3'- aggGUCGGaGuUGGUAGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 114150 0.68 0.840622
Target:  5'- --gCAGCC-CAcGCCAUCAGcCGCCCc -3'
miRNA:   3'- aggGUCGGaGU-UGGUAGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 113919 0.73 0.551898
Target:  5'- -gCCAGUCUCAACUAucgcuccuUCAGUCACuCCa -3'
miRNA:   3'- agGGUCGGAGUUGGU--------AGUCAGUG-GGc -5'
33416 5' -56.2 NC_007605.1 + 109081 0.69 0.798076
Target:  5'- cUUCGGCCUCGGCCAUCuGgaggCgGCCCu -3'
miRNA:   3'- aGGGUCGGAGUUGGUAGuCa---G-UGGGc -5'
33416 5' -56.2 NC_007605.1 + 109067 0.66 0.904395
Target:  5'- uUCCaGGCCUCAuCCugcGUCaacagauAGUCACCCu -3'
miRNA:   3'- -AGGgUCGGAGUuGG---UAG-------UCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 108319 0.67 0.871358
Target:  5'- cCCCAccuGCCUCGACCcgggCGGcuaCACCCc -3'
miRNA:   3'- aGGGU---CGGAGUUGGua--GUCa--GUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.