miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 104844 0.66 0.927823
Target:  5'- aUCCC--CCUgAaagaugGCCAUCAGUaggCACCCGg -3'
miRNA:   3'- -AGGGucGGAgU------UGGUAGUCA---GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 103936 0.68 0.82411
Target:  5'- cUCCauaGGCCUCuGCCGggaggugcUgGGUCGCCUGa -3'
miRNA:   3'- -AGGg--UCGGAGuUGGU--------AgUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 100204 0.7 0.722806
Target:  5'- gCCCAGCUcCAucCCAgCAGUCACCUc -3'
miRNA:   3'- aGGGUCGGaGUu-GGUaGUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 99077 0.67 0.892219
Target:  5'- gUCUUAGCCggCAGCUgcgccucuuuGUCuGUCAUCCGg -3'
miRNA:   3'- -AGGGUCGGa-GUUGG----------UAGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 96713 0.68 0.848602
Target:  5'- gUCCCAGUagUCAGUCAUCA-UCAUCCGg -3'
miRNA:   3'- -AGGGUCGg-AGUUGGUAGUcAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 76417 0.67 0.892219
Target:  5'- gUCauuaUAGCCUCAGCCAUC---UACCUGa -3'
miRNA:   3'- -AGg---GUCGGAGUUGGUAGucaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 66387 0.66 0.916886
Target:  5'- aCUCgggGGCCUCuacACCG-CcGUCACCCGg -3'
miRNA:   3'- aGGG---UCGGAGu--UGGUaGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 65386 0.67 0.878529
Target:  5'- cUUCCAGCCUCucuuuCCAgcacaggUGGUCugCCa -3'
miRNA:   3'- -AGGGUCGGAGuu---GGUa------GUCAGugGGc -5'
33416 5' -56.2 NC_007605.1 + 65359 0.76 0.386495
Target:  5'- gCCCucCCUCGACUcUCAGUCACCCu -3'
miRNA:   3'- aGGGucGGAGUUGGuAGUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 61504 0.74 0.522397
Target:  5'- cCUCGGCCUCcGCCcgCAGguaggcCGCCCGg -3'
miRNA:   3'- aGGGUCGGAGuUGGuaGUCa-----GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 61313 0.67 0.892219
Target:  5'- gCCCuucGCCUgGAUCugCAGUCGCUCGg -3'
miRNA:   3'- aGGGu--CGGAgUUGGuaGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 55351 0.68 0.840622
Target:  5'- cUCCAGCgUCAGCC---GGUUGCCCa -3'
miRNA:   3'- aGGGUCGgAGUUGGuagUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 54174 0.68 0.848602
Target:  5'- -gCCAGCCUgGGCgGggCGGUUGCCUGg -3'
miRNA:   3'- agGGUCGGAgUUGgUa-GUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 54045 0.71 0.683044
Target:  5'- gCCCGGaCCUCGGCCGccucggccUCGGUCAgcagcUCCGa -3'
miRNA:   3'- aGGGUC-GGAGUUGGU--------AGUCAGU-----GGGC- -5'
33416 5' -56.2 NC_007605.1 + 48581 0.7 0.703043
Target:  5'- aUCCCAcGCCUCcaGACCGgu-GUCugGCCCGg -3'
miRNA:   3'- -AGGGU-CGGAG--UUGGUaguCAG--UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 48192 0.66 0.916886
Target:  5'- gCCCAGUCUCAcGCCAgcgagcUCGaUC-CCCGg -3'
miRNA:   3'- aGGGUCGGAGU-UGGU------AGUcAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 43691 0.7 0.742263
Target:  5'- gCCCAGCUUgGGCac-CuGUCGCCCGa -3'
miRNA:   3'- aGGGUCGGAgUUGguaGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 41087 0.66 0.911066
Target:  5'- -gCCAGCCUCAGCgAgguuaAGcugCACCUGg -3'
miRNA:   3'- agGGUCGGAGUUGgUag---UCa--GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 39539 0.69 0.770716
Target:  5'- gCCCaggggAGCC-CAGCCAcCAG-CACCCGc -3'
miRNA:   3'- aGGG-----UCGGaGUUGGUaGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 36978 0.72 0.591957
Target:  5'- gCCCAGCgUCAggaaguacaGCCGgucgUAGUCAUCCGa -3'
miRNA:   3'- aGGGUCGgAGU---------UGGUa---GUCAGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.