miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 36568 0.68 0.832455
Target:  5'- -gCCGGaCCUgAGCCA--GGUCACCCu -3'
miRNA:   3'- agGGUC-GGAgUUGGUagUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 35244 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 35054 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 34981 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 34019 0.67 0.890222
Target:  5'- aUCCCAGCCacuACCAuagcccccaccacaUUAGUCuCCCa -3'
miRNA:   3'- -AGGGUCGGaguUGGU--------------AGUCAGuGGGc -5'
33416 5' -56.2 NC_007605.1 + 32893 0.8 0.239468
Target:  5'- uUCCgGGCCUCAGCCAUCG---GCCCGg -3'
miRNA:   3'- -AGGgUCGGAGUUGGUAGUcagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 32175 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 31985 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 29106 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 28917 0.66 0.916314
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU-------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 28844 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 26522 0.66 0.89873
Target:  5'- gCCCAGCCUUcaGACUAUCAa--ACCUa -3'
miRNA:   3'- aGGGUCGGAG--UUGGUAGUcagUGGGc -5'
33416 5' -56.2 NC_007605.1 + 26037 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 25848 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 25775 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 23133 0.75 0.444424
Target:  5'- cCCCAGCCUguGCCAuaccacaccccccaUUAGUCuCCCGa -3'
miRNA:   3'- aGGGUCGGAguUGGU--------------AGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 22968 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 22779 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 22706 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 19900 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.