Results 81 - 92 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33416 | 5' | -56.2 | NC_007605.1 | + | 19710 | 0.66 | 0.920821 |
Target: 5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3' miRNA: 3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 19637 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 16831 | 0.71 | 0.693068 |
Target: 5'- gCCCAGCC-CGACCccCGGgCGCCCc -3' miRNA: 3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 16641 | 0.66 | 0.920821 |
Target: 5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3' miRNA: 3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 16568 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 14180 | 0.72 | 0.642619 |
Target: 5'- cCCCAGCCccauccgCGGCCcgCGGgagCACCCc -3' miRNA: 3'- aGGGUCGGa------GUUGGuaGUCa--GUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 13762 | 0.71 | 0.693068 |
Target: 5'- gCCCAGCC-CGACCccCGGgCGCCCc -3' miRNA: 3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 13572 | 0.66 | 0.920821 |
Target: 5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3' miRNA: 3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 13499 | 0.67 | 0.871358 |
Target: 5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3' miRNA: 3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 10764 | 0.68 | 0.815593 |
Target: 5'- cCCCAgauGCCcc--CCAcCAGUCACCCGg -3' miRNA: 3'- aGGGU---CGGaguuGGUaGUCAGUGGGC- -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 8392 | 0.68 | 0.815593 |
Target: 5'- -gCCAGCCUCAACUAcgacUC-GUgGCCCc -3' miRNA: 3'- agGGUCGGAGUUGGU----AGuCAgUGGGc -5' |
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33416 | 5' | -56.2 | NC_007605.1 | + | 8272 | 1.1 | 0.002655 |
Target: 5'- uUCCCAGCCUCAACCAUCAGUCACCCGg -3' miRNA: 3'- -AGGGUCGGAGUUGGUAGUCAGUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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