miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 103936 0.68 0.82411
Target:  5'- cUCCauaGGCCUCuGCCGggaggugcUgGGUCGCCUGa -3'
miRNA:   3'- -AGGg--UCGGAGuUGGU--------AgUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 125122 0.71 0.693068
Target:  5'- cCCUGGCCUgCAACCG-CAGccCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUUGGUaGUCa-GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 48581 0.7 0.703043
Target:  5'- aUCCCAcGCCUCcaGACCGgu-GUCugGCCCGg -3'
miRNA:   3'- -AGGGU-CGGAG--UUGGUaguCAG--UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 100204 0.7 0.722806
Target:  5'- gCCCAGCUcCAucCCAgCAGUCACCUc -3'
miRNA:   3'- aGGGUCGGaGUu-GGUaGUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 164314 0.7 0.751854
Target:  5'- gCCCAGCCUCGcaaACCAg-AGUCugCg- -3'
miRNA:   3'- aGGGUCGGAGU---UGGUagUCAGugGgc -5'
33416 5' -56.2 NC_007605.1 + 133809 0.69 0.761341
Target:  5'- aUCgCCGaCCUCAagGCCA--AGUCACCCGg -3'
miRNA:   3'- -AG-GGUcGGAGU--UGGUagUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 117716 0.69 0.798076
Target:  5'- -gCCAGCCUUucuGCCAgucaGGUCACCg- -3'
miRNA:   3'- agGGUCGGAGu--UGGUag--UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 164722 0.69 0.798076
Target:  5'- aCCCAcGCCUCGACCGg-GGUC-CUCa -3'
miRNA:   3'- aGGGU-CGGAGUUGGUagUCAGuGGGc -5'
33416 5' -56.2 NC_007605.1 + 10764 0.68 0.815593
Target:  5'- cCCCAgauGCCcc--CCAcCAGUCACCCGg -3'
miRNA:   3'- aGGGU---CGGaguuGGUaGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 35244 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 32175 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 29106 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 61504 0.74 0.522397
Target:  5'- cCUCGGCCUCcGCCcgCAGguaggcCGCCCGg -3'
miRNA:   3'- aGGGUCGGAGuUGGuaGUCa-----GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 133352 0.74 0.532167
Target:  5'- cCCCAGCC-CAGCCGuucacUCGGcUCACCgGg -3'
miRNA:   3'- aGGGUCGGaGUUGGU-----AGUC-AGUGGgC- -5'
33416 5' -56.2 NC_007605.1 + 54045 0.71 0.683044
Target:  5'- gCCCGGaCCUCGGCCGccucggccUCGGUCAgcagcUCCGa -3'
miRNA:   3'- aGGGUC-GGAGUUGGU--------AGUCAGU-----GGGC- -5'
33416 5' -56.2 NC_007605.1 + 13762 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 16831 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 19900 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 22968 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 26037 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.