miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 150758 0.68 0.848602
Target:  5'- gUCCCAGCCgaggCcgcGCCAgagCAGa-GCCCGg -3'
miRNA:   3'- -AGGGUCGGa---Gu--UGGUa--GUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 96713 0.68 0.848602
Target:  5'- gUCCCAGUagUCAGUCAUCA-UCAUCCGg -3'
miRNA:   3'- -AGGGUCGg-AGUUGGUAGUcAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 55351 0.68 0.840622
Target:  5'- cUCCAGCgUCAGCC---GGUUGCCCa -3'
miRNA:   3'- aGGGUCGgAGUUGGuagUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 103936 0.68 0.82411
Target:  5'- cUCCauaGGCCUCuGCCGggaggugcUgGGUCGCCUGa -3'
miRNA:   3'- -AGGg--UCGGAGuUGGU--------AgUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 10764 0.68 0.815593
Target:  5'- cCCCAgauGCCcc--CCAcCAGUCACCCGg -3'
miRNA:   3'- aGGGU---CGGaguuGGUaGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 164722 0.69 0.798076
Target:  5'- aCCCAcGCCUCGACCGg-GGUC-CUCa -3'
miRNA:   3'- aGGGU-CGGAGUUGGUagUCAGuGGGc -5'
33416 5' -56.2 NC_007605.1 + 117716 0.69 0.798076
Target:  5'- -gCCAGCCUUucuGCCAgucaGGUCACCg- -3'
miRNA:   3'- agGGUCGGAGu--UGGUag--UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 133809 0.69 0.761341
Target:  5'- aUCgCCGaCCUCAagGCCA--AGUCACCCGg -3'
miRNA:   3'- -AG-GGUcGGAGU--UGGUagUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 164314 0.7 0.751854
Target:  5'- gCCCAGCCUCGcaaACCAg-AGUCugCg- -3'
miRNA:   3'- aGGGUCGGAGU---UGGUagUCAGugGgc -5'
33416 5' -56.2 NC_007605.1 + 100204 0.7 0.722806
Target:  5'- gCCCAGCUcCAucCCAgCAGUCACCUc -3'
miRNA:   3'- aGGGUCGGaGUu-GGUaGUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 48581 0.7 0.703043
Target:  5'- aUCCCAcGCCUCcaGACCGgu-GUCugGCCCGg -3'
miRNA:   3'- -AGGGU-CGGAG--UUGGUaguCAG--UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 169293 0.71 0.693068
Target:  5'- gUCCGGCCUCGugUcagCGGUCucugGCCCGg -3'
miRNA:   3'- aGGGUCGGAGUugGua-GUCAG----UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 14180 0.72 0.642619
Target:  5'- cCCCAGCCccauccgCGGCCcgCGGgagCACCCc -3'
miRNA:   3'- aGGGUCGGa------GUUGGuaGUCa--GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 36978 0.72 0.591957
Target:  5'- gCCCAGCgUCAggaaguacaGCCGgucgUAGUCAUCCGa -3'
miRNA:   3'- aGGGUCGgAGU---------UGGUa---GUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 114201 0.73 0.581883
Target:  5'- --gCAGCCcCcGCCAUCAGcCGCCCGg -3'
miRNA:   3'- aggGUCGGaGuUGGUAGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 167221 0.73 0.571843
Target:  5'- gCCCGGCCagGGCCAUCuccaccaggcaGGUCACCa- -3'
miRNA:   3'- aGGGUCGGagUUGGUAG-----------UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 113919 0.73 0.551898
Target:  5'- -gCCAGUCUCAACUAucgcuccuUCAGUCACuCCa -3'
miRNA:   3'- agGGUCGGAGUUGGU--------AGUCAGUG-GGc -5'
33416 5' -56.2 NC_007605.1 + 23133 0.75 0.444424
Target:  5'- cCCCAGCCUguGCCAuaccacaccccccaUUAGUCuCCCGa -3'
miRNA:   3'- aGGGUCGGAguUGGU--------------AGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 32893 0.8 0.239468
Target:  5'- uUCCgGGCCUCAGCCAUCG---GCCCGg -3'
miRNA:   3'- -AGGgUCGGAGUUGGUAGUcagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 66387 0.66 0.916886
Target:  5'- aCUCgggGGCCUCuacACCG-CcGUCACCCGg -3'
miRNA:   3'- aGGG---UCGGAGu--UGGUaGuCAGUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.