miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 108319 0.67 0.871358
Target:  5'- cCCCAccuGCCUCGACCcgggCGGcuaCACCCc -3'
miRNA:   3'- aGGGU---CGGAGUUGGua--GUCa--GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 65386 0.67 0.878529
Target:  5'- cUUCCAGCCUCucuuuCCAgcacaggUGGUCugCCa -3'
miRNA:   3'- -AGGGUCGGAGuu---GGUa------GUCAGugGGc -5'
33416 5' -56.2 NC_007605.1 + 34019 0.67 0.890222
Target:  5'- aUCCCAGCCacuACCAuagcccccaccacaUUAGUCuCCCa -3'
miRNA:   3'- -AGGGUCGGaguUGGU--------------AGUCAGuGGGc -5'
33416 5' -56.2 NC_007605.1 + 61313 0.67 0.892219
Target:  5'- gCCCuucGCCUgGAUCugCAGUCGCUCGg -3'
miRNA:   3'- aGGGu--CGGAgUUGGuaGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 99077 0.67 0.892219
Target:  5'- gUCUUAGCCggCAGCUgcgccucuuuGUCuGUCAUCCGg -3'
miRNA:   3'- -AGGGUCGGa-GUUGG----------UAGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 140634 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 137565 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 32893 0.8 0.239468
Target:  5'- uUCCgGGCCUCAGCCAUCG---GCCCGg -3'
miRNA:   3'- -AGGgUCGGAGUUGGUAGUcagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 23133 0.75 0.444424
Target:  5'- cCCCAGCCUguGCCAuaccacaccccccaUUAGUCuCCCGa -3'
miRNA:   3'- aGGGUCGGAguUGGU--------------AGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 113919 0.73 0.551898
Target:  5'- -gCCAGUCUCAACUAucgcuccuUCAGUCACuCCa -3'
miRNA:   3'- agGGUCGGAGUUGGU--------AGUCAGUG-GGc -5'
33416 5' -56.2 NC_007605.1 + 167221 0.73 0.571843
Target:  5'- gCCCGGCCagGGCCAUCuccaccaggcaGGUCACCa- -3'
miRNA:   3'- aGGGUCGGagUUGGUAG-----------UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 114201 0.73 0.581883
Target:  5'- --gCAGCCcCcGCCAUCAGcCGCCCGg -3'
miRNA:   3'- aggGUCGGaGuUGGUAGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 36978 0.72 0.591957
Target:  5'- gCCCAGCgUCAggaaguacaGCCGgucgUAGUCAUCCGa -3'
miRNA:   3'- aGGGUCGgAGU---------UGGUa---GUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 14180 0.72 0.642619
Target:  5'- cCCCAGCCccauccgCGGCCcgCGGgagCACCCc -3'
miRNA:   3'- aGGGUCGGa------GUUGGuaGUCa--GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 169293 0.71 0.693068
Target:  5'- gUCCGGCCUCGugUcagCGGUCucugGCCCGg -3'
miRNA:   3'- aGGGUCGGAGUugGua-GUCAG----UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 43691 0.7 0.742263
Target:  5'- gCCCAGCUUgGGCac-CuGUCGCCCGa -3'
miRNA:   3'- aGGGUCGGAgUUGguaGuCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 39539 0.69 0.770716
Target:  5'- gCCCaggggAGCC-CAGCCAcCAG-CACCCGc -3'
miRNA:   3'- aGGG-----UCGGaGUUGGUaGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118552 0.69 0.789092
Target:  5'- aCCCGGCCUaCGucuCCG-CAGaCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUu--GGUaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 118669 0.69 0.796291
Target:  5'- cCCCAGCCggacgcccccaAGCUAUUGGUCcCCCGc -3'
miRNA:   3'- aGGGUCGGag---------UUGGUAGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 109081 0.69 0.798076
Target:  5'- cUUCGGCCUCGGCCAUCuGgaggCgGCCCu -3'
miRNA:   3'- aGGGUCGGAGUUGGUAGuCa---G-UGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.