miRNA display CGI


Results 21 - 40 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 8392 0.68 0.815593
Target:  5'- -gCCAGCCUCAACUAcgacUC-GUgGCCCc -3'
miRNA:   3'- agGGUCGGAGUUGGU----AGuCAgUGGGc -5'
33416 5' -56.2 NC_007605.1 + 155978 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 39539 0.69 0.770716
Target:  5'- gCCCaggggAGCC-CAGCCAcCAG-CACCCGc -3'
miRNA:   3'- aGGG-----UCGGaGUUGGUaGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 113919 0.73 0.551898
Target:  5'- -gCCAGUCUCAACUAucgcuccuUCAGUCACuCCa -3'
miRNA:   3'- agGGUCGGAGUUGGU--------AGUCAGUG-GGc -5'
33416 5' -56.2 NC_007605.1 + 153057 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 34019 0.67 0.890222
Target:  5'- aUCCCAGCCacuACCAuagcccccaccacaUUAGUCuCCCa -3'
miRNA:   3'- -AGGGUCGGaguUGGU--------------AGUCAGuGGGc -5'
33416 5' -56.2 NC_007605.1 + 149840 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 23133 0.75 0.444424
Target:  5'- cCCCAGCCUguGCCAuaccacaccccccaUUAGUCuCCCGa -3'
miRNA:   3'- aGGGUCGGAguUGGU--------------AGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 65386 0.67 0.878529
Target:  5'- cUUCCAGCCUCucuuuCCAgcacaggUGGUCugCCa -3'
miRNA:   3'- -AGGGUCGGAGuu---GGUa------GUCAGugGGc -5'
33416 5' -56.2 NC_007605.1 + 32893 0.8 0.239468
Target:  5'- uUCCgGGCCUCAGCCAUCG---GCCCGg -3'
miRNA:   3'- -AGGgUCGGAGUUGGUAGUcagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 152909 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 36568 0.68 0.832455
Target:  5'- -gCCGGaCCUgAGCCA--GGUCACCCu -3'
miRNA:   3'- agGGUC-GGAgUUGGUagUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 137565 0.69 0.798076
Target:  5'- gCCCGGaCUCuGCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118552 0.69 0.789092
Target:  5'- aCCCGGCCUaCGucuCCG-CAGaCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUu--GGUaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 14180 0.72 0.642619
Target:  5'- cCCCAGCCccauccgCGGCCcgCGGgagCACCCc -3'
miRNA:   3'- aGGGUCGGa------GUUGGuaGUCa--GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 167221 0.73 0.571843
Target:  5'- gCCCGGCCagGGCCAUCuccaccaggcaGGUCACCa- -3'
miRNA:   3'- aGGGUCGGagUUGGUAG-----------UCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 143703 0.66 0.89873
Target:  5'- gCCCGGaCUC-GCCAaCAGagACCCGg -3'
miRNA:   3'- aGGGUCgGAGuUGGUaGUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 156126 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 143850 0.67 0.892219
Target:  5'- aCCCGGgCUCGGCCAgccCAGcCGaCCGg -3'
miRNA:   3'- aGGGUCgGAGUUGGUa--GUCaGUgGGC- -5'
33416 5' -56.2 NC_007605.1 + 61313 0.67 0.892219
Target:  5'- gCCCuucGCCUgGAUCugCAGUCGCUCGg -3'
miRNA:   3'- aGGGu--CGGAgUUGGuaGUCAGUGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.