miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 109081 0.69 0.798076
Target:  5'- cUUCGGCCUCGGCCAUCuGgaggCgGCCCu -3'
miRNA:   3'- aGGGUCGGAGUUGGUAGuCa---G-UGGGc -5'
33416 5' -56.2 NC_007605.1 + 104844 0.66 0.927823
Target:  5'- aUCCC--CCUgAaagaugGCCAUCAGUaggCACCCGg -3'
miRNA:   3'- -AGGGucGGAgU------UGGUAGUCA---GUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 19900 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 19637 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 16831 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 54174 0.68 0.848602
Target:  5'- -gCCAGCCUgGGCgGggCGGUUGCCUGg -3'
miRNA:   3'- agGGUCGGAgUUGgUa-GUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 133352 0.74 0.532167
Target:  5'- cCCCAGCC-CAGCCGuucacUCGGcUCACCgGg -3'
miRNA:   3'- aGGGUCGGaGUUGGU-----AGUC-AGUGGgC- -5'
33416 5' -56.2 NC_007605.1 + 35054 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 31985 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 25848 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 130028 0.67 0.859448
Target:  5'- -aCCAGgCUCAACaCAugcucaucucccuucUCGGUCACUCGc -3'
miRNA:   3'- agGGUCgGAGUUG-GU---------------AGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 144355 0.67 0.863976
Target:  5'- uUCCUAGCCagGGCCAUguGUU-CCUGc -3'
miRNA:   3'- -AGGGUCGGagUUGGUAguCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 123930 0.67 0.871358
Target:  5'- gCCCAGCUUgaugacggCGGCUgagAUCGG-CACCCGg -3'
miRNA:   3'- aGGGUCGGA--------GUUGG---UAGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 13499 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 16568 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 150758 0.68 0.848602
Target:  5'- gUCCCAGCCgaggCcgcGCCAgagCAGa-GCCCGg -3'
miRNA:   3'- -AGGGUCGGa---Gu--UGGUa--GUCagUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 100204 0.7 0.722806
Target:  5'- gCCCAGCUcCAucCCAgCAGUCACCUc -3'
miRNA:   3'- aGGGUCGGaGUu-GGUaGUCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 48581 0.7 0.703043
Target:  5'- aUCCCAcGCCUCcaGACCGgu-GUCugGCCCGg -3'
miRNA:   3'- -AGGGU-CGGAG--UUGGUaguCAG--UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 125122 0.71 0.693068
Target:  5'- cCCUGGCCUgCAACCG-CAGccCACCCa -3'
miRNA:   3'- aGGGUCGGA-GUUGGUaGUCa-GUGGGc -5'
33416 5' -56.2 NC_007605.1 + 35244 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.