miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33416 5' -56.2 NC_007605.1 + 19900 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 16831 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 13762 0.71 0.693068
Target:  5'- gCCCAGCC-CGACCccCGGgCGCCCc -3'
miRNA:   3'- aGGGUCGGaGUUGGuaGUCaGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 54174 0.68 0.848602
Target:  5'- -gCCAGCCUgGGCgGggCGGUUGCCUGg -3'
miRNA:   3'- agGGUCGGAgUUGgUa-GUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 130028 0.67 0.859448
Target:  5'- -aCCAGgCUCAACaCAugcucaucucccuucUCGGUCACUCGc -3'
miRNA:   3'- agGGUCgGAGUUG-GU---------------AGUCAGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 16641 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 13572 0.66 0.920821
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcgguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU--------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 153242 0.66 0.916886
Target:  5'- gCCgGGuCCUCGGCCAUCuccgucuuucUCGCCCc -3'
miRNA:   3'- aGGgUC-GGAGUUGGUAGuc--------AGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 48192 0.66 0.916886
Target:  5'- gCCCAGUCUCAcGCCAgcgagcUCGaUC-CCCGg -3'
miRNA:   3'- aGGGUCGGAGU-UGGU------AGUcAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 28917 0.66 0.916314
Target:  5'- gCCCAGCCUCGuccaccccuccCCAcguggacaggcccUCuGUCcACCCGg -3'
miRNA:   3'- aGGGUCGGAGUu----------GGU-------------AGuCAG-UGGGC- -5'
33416 5' -56.2 NC_007605.1 + 118681 0.66 0.911066
Target:  5'- cUCCCGGCCUCuuUUAUagcUAGUCuccacACCCa -3'
miRNA:   3'- -AGGGUCGGAGuuGGUA---GUCAG-----UGGGc -5'
33416 5' -56.2 NC_007605.1 + 128928 0.66 0.905013
Target:  5'- gCCgAGCCUCgGACCucaCGGUCACUa- -3'
miRNA:   3'- aGGgUCGGAG-UUGGua-GUCAGUGGgc -5'
33416 5' -56.2 NC_007605.1 + 109067 0.66 0.904395
Target:  5'- uUCCaGGCCUCAuCCugcGUCaacagauAGUCACCCu -3'
miRNA:   3'- -AGGgUCGGAGUuGG---UAG-------UCAGUGGGc -5'
33416 5' -56.2 NC_007605.1 + 76417 0.67 0.892219
Target:  5'- gUCauuaUAGCCUCAGCCAUC---UACCUGa -3'
miRNA:   3'- -AGg---GUCGGAGUUGGUAGucaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 160038 0.67 0.885485
Target:  5'- gCCCGGCCUCGccuucuccucaGCCuccaaCAGgUGCCCGa -3'
miRNA:   3'- aGGGUCGGAGU-----------UGGua---GUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 19637 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 16568 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 13499 0.67 0.871358
Target:  5'- cCCCAGCCUgaGGCC--CAGUCuCCUGu -3'
miRNA:   3'- aGGGUCGGAg-UUGGuaGUCAGuGGGC- -5'
33416 5' -56.2 NC_007605.1 + 123930 0.67 0.871358
Target:  5'- gCCCAGCUUgaugacggCGGCUgagAUCGG-CACCCGg -3'
miRNA:   3'- aGGGUCGGA--------GUUGG---UAGUCaGUGGGC- -5'
33416 5' -56.2 NC_007605.1 + 144355 0.67 0.863976
Target:  5'- uUCCUAGCCagGGCCAUguGUU-CCUGc -3'
miRNA:   3'- -AGGGUCGGagUUGGUAguCAGuGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.