miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33417 3' -55.8 NC_007605.1 + 60020 0.67 0.864818
Target:  5'- gGACUauGGCCUCGGCaCGCUcgGCGUcgaugGCg -3'
miRNA:   3'- gUUGAgcCUGGAGUCG-GCGA--CGUA-----CG- -5'
33417 3' -55.8 NC_007605.1 + 67011 0.67 0.864818
Target:  5'- gAGC-CuGGCUUCAGCgGCUGCGgaggGCu -3'
miRNA:   3'- gUUGaGcCUGGAGUCGgCGACGUa---CG- -5'
33417 3' -55.8 NC_007605.1 + 115454 0.68 0.857193
Target:  5'- -uGCUC-GACCUgGGCCGCggccaccgGCAuaUGCu -3'
miRNA:   3'- guUGAGcCUGGAgUCGGCGa-------CGU--ACG- -5'
33417 3' -55.8 NC_007605.1 + 159560 0.68 0.857193
Target:  5'- --cCUCGG-CC-CAaCCGCUGCAUGg -3'
miRNA:   3'- guuGAGCCuGGaGUcGGCGACGUACg -5'
33417 3' -55.8 NC_007605.1 + 8298 0.68 0.840527
Target:  5'- gGACUCGGgaGCCUuaaugauuguggaCAG-CGCgGCAUGCg -3'
miRNA:   3'- gUUGAGCC--UGGA-------------GUCgGCGaCGUACG- -5'
33417 3' -55.8 NC_007605.1 + 98935 0.68 0.840527
Target:  5'- aAGCUCauGGGCCUaaCGGCCugccugcGCcGCAUGCg -3'
miRNA:   3'- gUUGAG--CCUGGA--GUCGG-------CGaCGUACG- -5'
33417 3' -55.8 NC_007605.1 + 118264 0.68 0.824728
Target:  5'- -cGCUUgGGGCCUCGGCUgGCUcccaGUAUGCc -3'
miRNA:   3'- guUGAG-CCUGGAGUCGG-CGA----CGUACG- -5'
33417 3' -55.8 NC_007605.1 + 108946 0.68 0.824728
Target:  5'- gGAUUUGG-CC-CAGCCGgUGCugGUGCg -3'
miRNA:   3'- gUUGAGCCuGGaGUCGGCgACG--UACG- -5'
33417 3' -55.8 NC_007605.1 + 10783 0.68 0.824728
Target:  5'- -cGCgUCGcaGGCCUCGGCCggGCUGC-UGCu -3'
miRNA:   3'- guUG-AGC--CUGGAGUCGG--CGACGuACG- -5'
33417 3' -55.8 NC_007605.1 + 29504 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 30829 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 28893 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 28994 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29096 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29198 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29300 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29402 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29810 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29708 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5'
33417 3' -55.8 NC_007605.1 + 29606 0.68 0.816156
Target:  5'- gAACccCGGACC-CGGCUGCaGCcgGCc -3'
miRNA:   3'- gUUGa-GCCUGGaGUCGGCGaCGuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.