Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33417 | 5' | -61.5 | NC_007605.1 | + | 38761 | 0.67 | 0.634412 |
Target: 5'- cCUGggGCAgCCGGGguucCUGGCGCuccGGGgGCa -3' miRNA: 3'- -GACa-UGU-GGCCC----GACCGCG---UCCgCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 224 | 0.67 | 0.62453 |
Target: 5'- uUGgGgGCUuGGCUGGCGCggccggGGGCGCg -3' miRNA: 3'- gACaUgUGGcCCGACCGCG------UCCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 1284 | 0.67 | 0.62453 |
Target: 5'- uUGgGgGCUuGGCUGGCGCggccggGGGCGCg -3' miRNA: 3'- gACaUgUGGcCCGACCGCG------UCCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 762 | 0.67 | 0.62453 |
Target: 5'- uUGgGgGCUuGGCUGGCGCggccggGGGCGCg -3' miRNA: 3'- gACaUgUGGcCCGACCGCG------UCCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 136548 | 0.67 | 0.62453 |
Target: 5'- --cUACGCCGGGCccgcgGGCGgggaccCGGGUGCc -3' miRNA: 3'- gacAUGUGGCCCGa----CCGC------GUCCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 166790 | 0.67 | 0.62453 |
Target: 5'- -cGUAgaagaGCCGGGCaGGcCGCAGGCa-- -3' miRNA: 3'- gaCAUg----UGGCCCGaCC-GCGUCCGcga -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 1822 | 0.67 | 0.62453 |
Target: 5'- uUGgGgGCUuGGCUGGCGCggccggGGGCGCg -3' miRNA: 3'- gACaUgUGGcCCGACCGCG------UCCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 99016 | 0.67 | 0.594945 |
Target: 5'- gUGUaucACGCCGGGC-GGUGCAuccGGCuGCc -3' miRNA: 3'- gACA---UGUGGCCCGaCCGCGU---CCG-CGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 91337 | 0.67 | 0.585125 |
Target: 5'- gCUGggGCACCgGGGCUGGCGuUAGGg--- -3' miRNA: 3'- -GACa-UGUGG-CCCGACCGC-GUCCgcga -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 158599 | 0.67 | 0.585125 |
Target: 5'- --cUGCACCGuGGUggcggggGGUGCGGGCuGCUc -3' miRNA: 3'- gacAUGUGGC-CCGa------CCGCGUCCG-CGA- -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 7084 | 0.68 | 0.555881 |
Target: 5'- gCUGUACG-CGGaGCUGGCcuGCAGGacaGCc -3' miRNA: 3'- -GACAUGUgGCC-CGACCG--CGUCCg--CGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 103652 | 0.68 | 0.536619 |
Target: 5'- gCUGgccggggGCAUauaGGGCaucagGGCGCAGGUGUg -3' miRNA: 3'- -GACa------UGUGg--CCCGa----CCGCGUCCGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 12487 | 0.69 | 0.508184 |
Target: 5'- cCUGUACACCuucaucacgGGGCcccUGGCGgAGGagaGCg -3' miRNA: 3'- -GACAUGUGG---------CCCG---ACCGCgUCCg--CGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 90300 | 0.69 | 0.488662 |
Target: 5'- gUGUGCgucguGCCGGGgcagccaCUGGUGCAGGCuGUg -3' miRNA: 3'- gACAUG-----UGGCCC-------GACCGCGUCCG-CGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 66304 | 0.7 | 0.444565 |
Target: 5'- cCUGaugGCGgaGGGCaGGCGCGGGaCGCg -3' miRNA: 3'- -GACa--UGUggCCCGaCCGCGUCC-GCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 147232 | 0.7 | 0.434974 |
Target: 5'- -gGUGCACUccaucugguaaggGGGCUGGUGCGGaCGCc -3' miRNA: 3'- gaCAUGUGG-------------CCCGACCGCGUCcGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 38308 | 0.75 | 0.236476 |
Target: 5'- ---aGgGCgGGGCUGGCGCAGaGCGCc -3' miRNA: 3'- gacaUgUGgCCCGACCGCGUC-CGCGa -5' |
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33417 | 5' | -61.5 | NC_007605.1 | + | 8151 | 1.07 | 0.001219 |
Target: 5'- gCUGUACACCGGGCUGGCGCAGGCGCUg -3' miRNA: 3'- -GACAUGUGGCCCGACCGCGUCCGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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