Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33418 | 3' | -57.9 | NC_007605.1 | + | 152185 | 0.66 | 0.873133 |
Target: 5'- -aCUCGcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- agGGGCuu-CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 149116 | 0.66 | 0.873133 |
Target: 5'- -aCUCGcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- agGGGCuu-CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 146047 | 0.66 | 0.873133 |
Target: 5'- -aCUCGcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- agGGGCuu-CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 142978 | 0.66 | 0.873133 |
Target: 5'- -aCUCGcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- agGGGCuu-CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 139909 | 0.66 | 0.873133 |
Target: 5'- -aCUCGcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- agGGGCuu-CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 136840 | 0.66 | 0.873133 |
Target: 5'- -aCUCGcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- agGGGCuu-CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 155254 | 0.66 | 0.873133 |
Target: 5'- -aCUCGcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- agGGGCuu-CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 158323 | 0.66 | 0.873133 |
Target: 5'- -aCUCGcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- agGGGCuu-CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 61779 | 0.66 | 0.868818 |
Target: 5'- cUCCCCGccgccuccugcacacGAGcGGCcAGGgccUCCauCUCUGCCg -3' miRNA: 3'- -AGGGGC---------------UUC-CCGaUCU---AGG--GAGACGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 12127 | 0.66 | 0.858467 |
Target: 5'- gCCCCGGccGGCUGGGgcacgagagCCCg--GCCc -3' miRNA: 3'- aGGGGCUucCCGAUCUa--------GGGagaCGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 65873 | 0.66 | 0.858467 |
Target: 5'- aCCCCGAacucugcccagGGGGCUcAGAUUUC-CaGCCc -3' miRNA: 3'- aGGGGCU-----------UCCCGA-UCUAGGGaGaCGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 45288 | 0.66 | 0.858467 |
Target: 5'- cCCCCGAGcaGGUcc-GUCCC-CUGCCa -3' miRNA: 3'- aGGGGCUUc-CCGaucUAGGGaGACGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 165886 | 0.66 | 0.858467 |
Target: 5'- uUCUgaGGAGGGCUGGG-CCCgggGCUa -3' miRNA: 3'- -AGGggCUUCCCGAUCUaGGGagaCGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 32946 | 0.66 | 0.858467 |
Target: 5'- aCCgCGGAGGGCcaaacuccgcGGUCCUuaucaguuuUCUGCCc -3' miRNA: 3'- aGGgGCUUCCCGau--------CUAGGG---------AGACGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 6912 | 0.66 | 0.858467 |
Target: 5'- aCCCCGGucgaGGCgUGGGUcgcgCCCUCgccGCCg -3' miRNA: 3'- aGGGGCUuc--CCG-AUCUA----GGGAGa--CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 98054 | 0.66 | 0.858467 |
Target: 5'- cUCCCCGAcuuauGGCUAGAuuUCCuacaaCUCaGCCc -3' miRNA: 3'- -AGGGGCUuc---CCGAUCU--AGG-----GAGaCGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 143265 | 0.66 | 0.857713 |
Target: 5'- cCUCUGGGgccgcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- aGGGGCUU-------CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 152472 | 0.66 | 0.857713 |
Target: 5'- cCUCUGGGgccgcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- aGGGGCUU-------CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 155541 | 0.66 | 0.857713 |
Target: 5'- cCUCUGGGgccgcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- aGGGGCUU-------CCCGA----UCUAGGGAGa-CGG- -5' |
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33418 | 3' | -57.9 | NC_007605.1 | + | 158610 | 0.66 | 0.857713 |
Target: 5'- cCUCUGGGgccgcccGGGCUgccgGGGUCCCUCcgGCUg -3' miRNA: 3'- aGGGGCUU-------CCCGA----UCUAGGGAGa-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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