miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33418 3' -57.9 NC_007605.1 + 146334 0.66 0.857713
Target:  5'- cCUCUGGGgccgcccGGGCUgccgGGGUCCCUCcgGCUg -3'
miRNA:   3'- aGGGGCUU-------CCCGA----UCUAGGGAGa-CGG- -5'
33418 3' -57.9 NC_007605.1 + 140196 0.66 0.857713
Target:  5'- cCUCUGGGgccgcccGGGCUgccgGGGUCCCUCcgGCUg -3'
miRNA:   3'- aGGGGCUU-------CCCGA----UCUAGGGAGa-CGG- -5'
33418 3' -57.9 NC_007605.1 + 137127 0.66 0.857713
Target:  5'- cCUCUGGGgccgcccGGGCUgccgGGGUCCCUCcgGCUg -3'
miRNA:   3'- aGGGGCUU-------CCCGA----UCUAGGGAGa-CGG- -5'
33418 3' -57.9 NC_007605.1 + 143265 0.66 0.857713
Target:  5'- cCUCUGGGgccgcccGGGCUgccgGGGUCCCUCcgGCUg -3'
miRNA:   3'- aGGGGCUU-------CCCGA----UCUAGGGAGa-CGG- -5'
33418 3' -57.9 NC_007605.1 + 112555 0.66 0.856957
Target:  5'- cCCCCG-GGGGCgGGAguggaggcucggCCCUCcGCa -3'
miRNA:   3'- aGGGGCuUCCCGaUCUa-----------GGGAGaCGg -5'
33418 3' -57.9 NC_007605.1 + 29383 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 29587 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 29485 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 29994 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 51102 0.66 0.850838
Target:  5'- cUUCCCGGAgaccggucuGGGCUcucGGAagCCCUCguuucgGCCc -3'
miRNA:   3'- -AGGGGCUU---------CCCGA---UCUa-GGGAGa-----CGG- -5'
33418 3' -57.9 NC_007605.1 + 29689 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 30096 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 30708 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 30810 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 30504 0.66 0.850838
Target:  5'- cCCCCGAgcuccAGGGCcGGAaCCCcggacccggCUGCa -3'
miRNA:   3'- aGGGGCU-----UCCCGaUCUaGGGa--------GACGg -5'
33418 3' -57.9 NC_007605.1 + 22293 0.66 0.850838
Target:  5'- cCCCCaGAAGGGaccCUAGGcgucCCCUCU-CCu -3'
miRNA:   3'- aGGGG-CUUCCC---GAUCUa---GGGAGAcGG- -5'
33418 3' -57.9 NC_007605.1 + 25362 0.66 0.850838
Target:  5'- cCCCCaGAAGGGaccCUAGGcgucCCCUCU-CCu -3'
miRNA:   3'- aGGGG-CUUCCC---GAUCUa---GGGAGAcGG- -5'
33418 3' -57.9 NC_007605.1 + 28431 0.66 0.850838
Target:  5'- cCCCCaGAAGGGaccCUAGGcgucCCCUCU-CCu -3'
miRNA:   3'- aGGGG-CUUCCC---GAUCUa---GGGAGAcGG- -5'
33418 3' -57.9 NC_007605.1 + 31500 0.66 0.850838
Target:  5'- cCCCCaGAAGGGaccCUAGGcgucCCCUCU-CCu -3'
miRNA:   3'- aGGGG-CUUCCC---GAUCUa---GGGAGAcGG- -5'
33418 3' -57.9 NC_007605.1 + 34569 0.66 0.850838
Target:  5'- cCCCCaGAAGGGaccCUAGGcgucCCCUCU-CCu -3'
miRNA:   3'- aGGGG-CUUCCC---GAUCUa---GGGAGAcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.