miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33418 5' -51.6 NC_007605.1 + 4410 0.66 0.990151
Target:  5'- gGUGGaGAUGGCCcuGGCCgggcagCGGGGAg -3'
miRNA:   3'- -CACCgUUAUUGGcuCCGGaa----GUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 98319 0.66 0.990151
Target:  5'- -aGGCcaccuGCCGGGGCCaguggaauccCAAGGAa -3'
miRNA:   3'- caCCGuuau-UGGCUCCGGaa--------GUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 82021 0.66 0.990151
Target:  5'- gGUGGCA---GCCGcGGCCaUCAccuGGGu -3'
miRNA:   3'- -CACCGUuauUGGCuCCGGaAGUu--CCU- -5'
33418 5' -51.6 NC_007605.1 + 109630 0.66 0.990151
Target:  5'- -gGGCGuguacGCgGAGGCCagCGGGGGa -3'
miRNA:   3'- caCCGUuau--UGgCUCCGGaaGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 38115 0.66 0.988773
Target:  5'- aUGGCAuUAGCCGAcauGGuCCUguacCAGGGu -3'
miRNA:   3'- cACCGUuAUUGGCU---CC-GGAa---GUUCCu -5'
33418 5' -51.6 NC_007605.1 + 62544 0.66 0.98725
Target:  5'- -gGGCcgccuccaGAUGGCCGAGGCCgaagCugcgccuggaaAAGGAg -3'
miRNA:   3'- caCCG--------UUAUUGGCUCCGGaa--G-----------UUCCU- -5'
33418 5' -51.6 NC_007605.1 + 11838 0.66 0.98725
Target:  5'- cUGGCccugGugCGggGGGCCUgCGAGGAg -3'
miRNA:   3'- cACCGuua-UugGC--UCCGGAaGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 10569 0.66 0.985572
Target:  5'- -aGGCccgGGCCcAGGCCUUgCAGGGc -3'
miRNA:   3'- caCCGuuaUUGGcUCCGGAA-GUUCCu -5'
33418 5' -51.6 NC_007605.1 + 58138 0.66 0.985572
Target:  5'- --cGCAGaGGCCGGGGCCgcaGAGGc -3'
miRNA:   3'- cacCGUUaUUGGCUCCGGaagUUCCu -5'
33418 5' -51.6 NC_007605.1 + 47656 0.66 0.985572
Target:  5'- -cGGCuGUGGCCGcAGGgg-UCGAGGAu -3'
miRNA:   3'- caCCGuUAUUGGC-UCCggaAGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 34709 0.66 0.985572
Target:  5'- aGUGGguGUAGCaGGGGCCcugCuGGGGg -3'
miRNA:   3'- -CACCguUAUUGgCUCCGGaa-GuUCCU- -5'
33418 5' -51.6 NC_007605.1 + 11141 0.67 0.983731
Target:  5'- aGUGGUAAUAACaccaggCGGGGCUgggcaAAGGGg -3'
miRNA:   3'- -CACCGUUAUUG------GCUCCGGaag--UUCCU- -5'
33418 5' -51.6 NC_007605.1 + 139396 0.67 0.983731
Target:  5'- -gGGCGGgagggGGCUG-GGCCUcacccUCGGGGAc -3'
miRNA:   3'- caCCGUUa----UUGGCuCCGGA-----AGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 157809 0.67 0.983731
Target:  5'- -gGGCGGgagggGGCUG-GGCCUcacccUCGGGGAc -3'
miRNA:   3'- caCCGUUa----UUGGCuCCGGA-----AGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 154740 0.67 0.983731
Target:  5'- -gGGCGGgagggGGCUG-GGCCUcacccUCGGGGAc -3'
miRNA:   3'- caCCGUUa----UUGGCuCCGGA-----AGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 142465 0.67 0.983731
Target:  5'- -gGGCGGgagggGGCUG-GGCCUcacccUCGGGGAc -3'
miRNA:   3'- caCCGUUa----UUGGCuCCGGA-----AGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 120487 0.67 0.983731
Target:  5'- aUGGCAAggcccuauuUCGGGGCCgaaaCGAGGGc -3'
miRNA:   3'- cACCGUUauu------GGCUCCGGaa--GUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 145534 0.67 0.983731
Target:  5'- -gGGCGGgagggGGCUG-GGCCUcacccUCGGGGAc -3'
miRNA:   3'- caCCGUUa----UUGGCuCCGGA-----AGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 148603 0.67 0.983731
Target:  5'- -gGGCGGgagggGGCUG-GGCCUcacccUCGGGGAc -3'
miRNA:   3'- caCCGUUa----UUGGCuCCGGA-----AGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 66891 0.67 0.981717
Target:  5'- -cGGCGAgacCCGAGGCagaCAAGGc -3'
miRNA:   3'- caCCGUUauuGGCUCCGgaaGUUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.