miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33418 5' -51.6 NC_007605.1 + 3905 0.67 0.979521
Target:  5'- cUGGCAAUGGCUGAGGCgCUg------ -3'
miRNA:   3'- cACCGUUAUUGGCUCCG-GAaguuccu -5'
33418 5' -51.6 NC_007605.1 + 4410 0.66 0.990151
Target:  5'- gGUGGaGAUGGCCcuGGCCgggcagCGGGGAg -3'
miRNA:   3'- -CACCgUUAUUGGcuCCGGaa----GUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 7954 1.09 0.007146
Target:  5'- gGUGGCAAUAACCGAGGCCUUCAAGGAg -3'
miRNA:   3'- -CACCGUUAUUGGCUCCGGAAGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 10569 0.66 0.985572
Target:  5'- -aGGCccgGGCCcAGGCCUUgCAGGGc -3'
miRNA:   3'- caCCGuuaUUGGcUCCGGAA-GUUCCu -5'
33418 5' -51.6 NC_007605.1 + 11141 0.67 0.983731
Target:  5'- aGUGGUAAUAACaccaggCGGGGCUgggcaAAGGGg -3'
miRNA:   3'- -CACCGUUAUUG------GCUCCGGaag--UUCCU- -5'
33418 5' -51.6 NC_007605.1 + 11838 0.66 0.98725
Target:  5'- cUGGCccugGugCGggGGGCCUgCGAGGAg -3'
miRNA:   3'- cACCGuua-UugGC--UCCGGAaGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 13756 0.7 0.920051
Target:  5'- -aGGCGAacGCCGA-GCCUUCcuGGAc -3'
miRNA:   3'- caCCGUUauUGGCUcCGGAAGuuCCU- -5'
33418 5' -51.6 NC_007605.1 + 17661 0.67 0.979521
Target:  5'- uUGGagcgGGCCaAGGCCUUCGuGGAg -3'
miRNA:   3'- cACCguuaUUGGcUCCGGAAGUuCCU- -5'
33418 5' -51.6 NC_007605.1 + 22885 0.68 0.968446
Target:  5'- -cGGCAAgGGCUcaccaggGAGGCCUggGAGGGg -3'
miRNA:   3'- caCCGUUaUUGG-------CUCCGGAagUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 34709 0.66 0.985572
Target:  5'- aGUGGguGUAGCaGGGGCCcugCuGGGGg -3'
miRNA:   3'- -CACCguUAUUGgCUCCGGaa-GuUCCU- -5'
33418 5' -51.6 NC_007605.1 + 36612 0.69 0.945898
Target:  5'- -cGG-GGUGACCGGGGCCUUauuuugccaCAAGGc -3'
miRNA:   3'- caCCgUUAUUGGCUCCGGAA---------GUUCCu -5'
33418 5' -51.6 NC_007605.1 + 38115 0.66 0.988773
Target:  5'- aUGGCAuUAGCCGAcauGGuCCUguacCAGGGu -3'
miRNA:   3'- cACCGUuAUUGGCU---CC-GGAa---GUUCCu -5'
33418 5' -51.6 NC_007605.1 + 44480 0.69 0.931153
Target:  5'- --cGCuAUGcGCCGAGGCCUUUGAGGc -3'
miRNA:   3'- cacCGuUAU-UGGCUCCGGAAGUUCCu -5'
33418 5' -51.6 NC_007605.1 + 44579 0.73 0.806298
Target:  5'- -cGGCAucugggGUGACCGGGGCCaUCGGGu- -3'
miRNA:   3'- caCCGU------UAUUGGCUCCGGaAGUUCcu -5'
33418 5' -51.6 NC_007605.1 + 46202 0.68 0.968758
Target:  5'- gGUGGCAA--GgUGAGGUCUUCuGGGu -3'
miRNA:   3'- -CACCGUUauUgGCUCCGGAAGuUCCu -5'
33418 5' -51.6 NC_007605.1 + 47656 0.66 0.985572
Target:  5'- -cGGCuGUGGCCGcAGGgg-UCGAGGAu -3'
miRNA:   3'- caCCGuUAUUGGC-UCCggaAGUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 48008 0.7 0.925729
Target:  5'- cGUGGCcaggGGUuACCGAGGCCUcgugaaGAGGu -3'
miRNA:   3'- -CACCG----UUAuUGGCUCCGGAag----UUCCu -5'
33418 5' -51.6 NC_007605.1 + 51060 0.67 0.981717
Target:  5'- aGUGGCAuggGACCGGGaGCC-UCAGu-- -3'
miRNA:   3'- -CACCGUua-UUGGCUC-CGGaAGUUccu -5'
33418 5' -51.6 NC_007605.1 + 52688 0.68 0.965534
Target:  5'- -cGGUcuGUGGCCGGGGCUggaUAAGGGg -3'
miRNA:   3'- caCCGu-UAUUGGCUCCGGaa-GUUCCU- -5'
33418 5' -51.6 NC_007605.1 + 53071 0.73 0.806298
Target:  5'- aGUGGCAGU--UCGAcGGCCUcggCGGGGAa -3'
miRNA:   3'- -CACCGUUAuuGGCU-CCGGAa--GUUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.