miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33419 5' -62.4 NC_007605.1 + 31414 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 34483 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 22207 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 19138 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 159493 0.66 0.655455
Target:  5'- cGGGCCgGgcucucguGCCCCAGCcgGCcggggcaccuccGGGCUCUc -3'
miRNA:   3'- cUCCGGgC--------UGGGGUUGa-CG------------CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 155230 0.66 0.649623
Target:  5'- aGAGGCCaggggagagggaaggCGacucGCCCgGGCUGcCGGGgUCCc -3'
miRNA:   3'- -CUCCGG---------------GC----UGGGgUUGAC-GCCCgAGG- -5'
33419 5' -62.4 NC_007605.1 + 152161 0.66 0.649623
Target:  5'- aGAGGCCaggggagagggaaggCGacucGCCCgGGCUGcCGGGgUCCc -3'
miRNA:   3'- -CUCCGG---------------GC----UGGGgUUGAC-GCCCgAGG- -5'
33419 5' -62.4 NC_007605.1 + 139885 0.66 0.649623
Target:  5'- aGAGGCCaggggagagggaaggCGacucGCCCgGGCUGcCGGGgUCCc -3'
miRNA:   3'- -CUCCGG---------------GC----UGGGgUUGAC-GCCCgAGG- -5'
33419 5' -62.4 NC_007605.1 + 136816 0.66 0.649623
Target:  5'- aGAGGCCaggggagagggaaggCGacucGCCCgGGCUGcCGGGgUCCc -3'
miRNA:   3'- -CUCCGG---------------GC----UGGGgUUGAC-GCCCgAGG- -5'
33419 5' -62.4 NC_007605.1 + 146023 0.66 0.649623
Target:  5'- aGAGGCCaggggagagggaaggCGacucGCCCgGGCUGcCGGGgUCCc -3'
miRNA:   3'- -CUCCGG---------------GC----UGGGgUUGAC-GCCCgAGG- -5'
33419 5' -62.4 NC_007605.1 + 158299 0.66 0.649623
Target:  5'- aGAGGCCaggggagagggaaggCGacucGCCCgGGCUGcCGGGgUCCc -3'
miRNA:   3'- -CUCCGG---------------GC----UGGGgUUGAC-GCCCgAGG- -5'
33419 5' -62.4 NC_007605.1 + 149092 0.66 0.649623
Target:  5'- aGAGGCCaggggagagggaaggCGacucGCCCgGGCUGcCGGGgUCCc -3'
miRNA:   3'- -CUCCGG---------------GC----UGGGgUUGAC-GCCCgAGG- -5'
33419 5' -62.4 NC_007605.1 + 142954 0.66 0.649623
Target:  5'- aGAGGCCaggggagagggaaggCGacucGCCCgGGCUGcCGGGgUCCc -3'
miRNA:   3'- -CUCCGG---------------GC----UGGGgUUGAC-GCCCgAGG- -5'
33419 5' -62.4 NC_007605.1 + 43756 0.66 0.645733
Target:  5'- -uGGCuuGggGCUCCGGaggUGgGGGCUCCg -3'
miRNA:   3'- cuCCGggC--UGGGGUUg--ACgCCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 48770 0.66 0.645733
Target:  5'- -cGGCCgUGuguacuGCUCCAACUGCG-GCUCUg -3'
miRNA:   3'- cuCCGG-GC------UGGGGUUGACGCcCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 110682 0.66 0.645733
Target:  5'- uGAGGCCCugaaaGCCCCGcACcagGGGCUCa -3'
miRNA:   3'- -CUCCGGGc----UGGGGU-UGacgCCCGAGg -5'
33419 5' -62.4 NC_007605.1 + 45562 0.66 0.645733
Target:  5'- cGGGCCCGACCugacauCCGuCUGCccucccuGGCUUCu -3'
miRNA:   3'- cUCCGGGCUGG------GGUuGACGc------CCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 97376 0.66 0.645733
Target:  5'- gGAGGCCUu-CCCCuucCUGCGcGGcCUCa -3'
miRNA:   3'- -CUCCGGGcuGGGGuu-GACGC-CC-GAGg -5'
33419 5' -62.4 NC_007605.1 + 140894 0.66 0.636002
Target:  5'- cGGGuGCCCGcugGCUCCAACcuCGGGCcCCu -3'
miRNA:   3'- -CUC-CGGGC---UGGGGUUGacGCCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 137825 0.66 0.636002
Target:  5'- cGGGuGCCCGcugGCUCCAACcuCGGGCcCCu -3'
miRNA:   3'- -CUC-CGGGC---UGGGGUUGacGCCCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.