Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33420 | 3' | -55.7 | NC_007605.1 | + | 3720 | 0.71 | 0.67711 |
Target: 5'- aCAGUCaggUCUGGACCaggcccgguGGGGCUCcucccuuGCCCUa -3' miRNA: 3'- aGUUAG---AGACCUGG---------CUCCGAG-------UGGGA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 6638 | 1.07 | 0.004283 |
Target: 5'- cUCAAUCUCUGGACCGAGGCUCACCCUc -3' miRNA: 3'- -AGUUAGAGACCUGGCUCCGAGUGGGA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 9909 | 0.67 | 0.88987 |
Target: 5'- ---cUCUUugUGGACgGGGGCUCccggGCCCa -3' miRNA: 3'- aguuAGAG--ACCUGgCUCCGAG----UGGGa -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 33692 | 0.67 | 0.883017 |
Target: 5'- gUCGGUCUCucggaucgaguUGGGCCGGGGauaCACUCc -3' miRNA: 3'- -AGUUAGAG-----------ACCUGGCUCCga-GUGGGa -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 36719 | 0.7 | 0.728083 |
Target: 5'- gUCAc-CUCUGucacaACCGAGGCUUACCCc -3' miRNA: 3'- -AGUuaGAGACc----UGGCUCCGAGUGGGa -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 37343 | 0.66 | 0.912648 |
Target: 5'- cUCGGUCUUcaucagggacaagGGGCUGGGGaCUCACCa- -3' miRNA: 3'- -AGUUAGAGa------------CCUGGCUCC-GAGUGGga -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 42691 | 0.67 | 0.875944 |
Target: 5'- aUAAUCUCUagugaccgugaGGuCCGAGGCUCGgCgCUa -3' miRNA: 3'- aGUUAGAGA-----------CCuGGCUCCGAGUgG-GA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 45543 | 0.67 | 0.896497 |
Target: 5'- cCAGUCUCcGGGCCG-GGUcCggGCCCg -3' miRNA: 3'- aGUUAGAGaCCUGGCuCCGaG--UGGGa -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 47597 | 0.67 | 0.875944 |
Target: 5'- cCAggCUcCUGGAuCUGGGGCUgGCCUg -3' miRNA: 3'- aGUuaGA-GACCU-GGCUCCGAgUGGGa -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 51248 | 0.69 | 0.82069 |
Target: 5'- cCAGUCcCUGGGCCugccaGGGGC-CACCUUc -3' miRNA: 3'- aGUUAGaGACCUGG-----CUCCGaGUGGGA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 51826 | 0.67 | 0.875944 |
Target: 5'- -uGGUCUCcaccagGGACCGgaaGGGCUCagaguGCCCg -3' miRNA: 3'- agUUAGAGa-----CCUGGC---UCCGAG-----UGGGa -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 53540 | 0.69 | 0.82069 |
Target: 5'- ---cUCUCUGGACacugguguuugUGGGGCUCACUUUu -3' miRNA: 3'- aguuAGAGACCUG-----------GCUCCGAGUGGGA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 65866 | 0.68 | 0.871595 |
Target: 5'- ----cCUCUGGACCccgaacucugcccagGGGGCUCagauuuccaGCCCUa -3' miRNA: 3'- aguuaGAGACCUGG---------------CUCCGAG---------UGGGA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 71054 | 0.71 | 0.678122 |
Target: 5'- cCAAUCUCUGGAUgGGcGGC-CACCg- -3' miRNA: 3'- aGUUAGAGACCUGgCU-CCGaGUGGga -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 73190 | 0.69 | 0.803261 |
Target: 5'- cCAAUgUCUGcGugCGAgccgGGCUUGCCCUu -3' miRNA: 3'- aGUUAgAGAC-CugGCU----CCGAGUGGGA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 86082 | 0.69 | 0.803261 |
Target: 5'- aUCAGgaccCUGGGCCGGGGCcucCAUCCa -3' miRNA: 3'- -AGUUaga-GACCUGGCUCCGa--GUGGGa -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 108930 | 0.7 | 0.766623 |
Target: 5'- -gGAUCUUUGGACUGGGGgauUUgGCCCa -3' miRNA: 3'- agUUAGAGACCUGGCUCC---GAgUGGGa -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 109256 | 0.66 | 0.936348 |
Target: 5'- gCGGUCUCUGGcCCaacGGC-CACCUUu -3' miRNA: 3'- aGUUAGAGACCuGGcu-CCGaGUGGGA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 123609 | 0.67 | 0.896497 |
Target: 5'- --uGUCUCgcgGGGCCGGGGC-CGCgUUg -3' miRNA: 3'- aguUAGAGa--CCUGGCUCCGaGUGgGA- -5' |
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33420 | 3' | -55.7 | NC_007605.1 | + | 128812 | 0.71 | 0.71822 |
Target: 5'- -gGAUCUUUGGAaucuggCGGGGCUC-CCCa -3' miRNA: 3'- agUUAGAGACCUg-----GCUCCGAGuGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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