miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33421 3' -55 NC_007605.1 + 79508 0.65 0.95041
Target:  5'- -aUGUUaaggaugUCAGGGCUCUGAUuaaGACACUGc -3'
miRNA:   3'- cgACGG-------AGUCCUGGGACUG---UUGUGAC- -5'
33421 3' -55 NC_007605.1 + 64456 0.66 0.937337
Target:  5'- cGCggGUCUCAGGgcaGCCCUG-CAGCGg-- -3'
miRNA:   3'- -CGa-CGGAGUCC---UGGGACuGUUGUgac -5'
33421 3' -55 NC_007605.1 + 87665 0.66 0.937337
Target:  5'- gGCUGCUUUGGGucuCCCgGu--GCACUGg -3'
miRNA:   3'- -CGACGGAGUCCu--GGGaCuguUGUGAC- -5'
33421 3' -55 NC_007605.1 + 101939 0.67 0.921692
Target:  5'- aGCUGCgCUCAGGGCCgCU-ACccCGCUa -3'
miRNA:   3'- -CGACG-GAGUCCUGG-GAcUGuuGUGAc -5'
33421 3' -55 NC_007605.1 + 64221 0.67 0.915994
Target:  5'- uGUUGCC-CAGGGCCagGAacACGCUGa -3'
miRNA:   3'- -CGACGGaGUCCUGGgaCUguUGUGAC- -5'
33421 3' -55 NC_007605.1 + 95145 0.67 0.910056
Target:  5'- aGCgGCCUcCAGGuCCaa-GCAGCACUGc -3'
miRNA:   3'- -CGaCGGA-GUCCuGGgacUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 167266 0.67 0.910056
Target:  5'- cGCUGaUgUCAu-GCCCUGACAGCACg- -3'
miRNA:   3'- -CGAC-GgAGUccUGGGACUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 35657 0.68 0.883945
Target:  5'- -gUGCUUCAGGACCCacGCAAgGuCUGu -3'
miRNA:   3'- cgACGGAGUCCUGGGacUGUUgU-GAC- -5'
33421 3' -55 NC_007605.1 + 126544 0.68 0.883945
Target:  5'- --aGCCUCGGGGCCCacccgGACGccaaggACACc- -3'
miRNA:   3'- cgaCGGAGUCCUGGGa----CUGU------UGUGac -5'
33421 3' -55 NC_007605.1 + 106516 0.68 0.876844
Target:  5'- gGCUGCC----GGCCUUGACGGCGCa- -3'
miRNA:   3'- -CGACGGagucCUGGGACUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 153113 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 146975 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 140837 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 58696 0.68 0.869522
Target:  5'- aCUGCCgugCAGGACCUcGGCcaGGgACUGa -3'
miRNA:   3'- cGACGGa--GUCCUGGGaCUG--UUgUGAC- -5'
33421 3' -55 NC_007605.1 + 143906 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 156182 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 159251 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 150044 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 137768 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 72155 0.68 0.867283
Target:  5'- -aUGCCUCAGGcacgcaaaguuccuGCCCcgGGCAugGCa- -3'
miRNA:   3'- cgACGGAGUCC--------------UGGGa-CUGUugUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.