miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33421 3' -55 NC_007605.1 + 3791 1.11 0.002693
Target:  5'- cGCUGCCUCAGGACCCUGACAACACUGa -3'
miRNA:   3'- -CGACGGAGUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3826 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3745 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3712 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 50053 0.8 0.281635
Target:  5'- cGCUGCUUCGGGACCCcagGACAuAC-CUGg -3'
miRNA:   3'- -CGACGGAGUCCUGGGa--CUGU-UGuGAC- -5'
33421 3' -55 NC_007605.1 + 132257 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132132 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132007 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 131882 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132382 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132507 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 133131 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132632 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 133006 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 133256 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132756 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132881 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 71808 0.77 0.403941
Target:  5'- aGCaGCCUCAGGACgCUGGCAguucACGCa- -3'
miRNA:   3'- -CGaCGGAGUCCUGgGACUGU----UGUGac -5'
33421 3' -55 NC_007605.1 + 3872 0.74 0.585295
Target:  5'- cGCUGCCUCAuaGCCCUaGCGACucuGCUGg -3'
miRNA:   3'- -CGACGGAGUccUGGGAcUGUUG---UGAC- -5'
33421 3' -55 NC_007605.1 + 59859 0.73 0.616037
Target:  5'- uGCUGCCUCAGGAaCCCUuuuGAU--CACUc -3'
miRNA:   3'- -CGACGGAGUCCU-GGGA---CUGuuGUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.