Results 21 - 40 of 58 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33421 | 3' | -55 | NC_007605.1 | + | 7633 | 0.69 | 0.838142 |
Target: 5'- cGCggGCCaCAGGugCCUGACggUGCc- -3' miRNA: 3'- -CGa-CGGaGUCCugGGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 118816 | 0.69 | 0.837317 |
Target: 5'- aGCUGCCccugaccagUUAGGACCCUuGACGgaugucuuuaacgGCGCg- -3' miRNA: 3'- -CGACGG---------AGUCCUGGGA-CUGU-------------UGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 57902 | 0.7 | 0.803743 |
Target: 5'- uGCUGCCaugCAcGGCCCUGaACAACgACUa -3' miRNA: 3'- -CGACGGa--GUcCUGGGAC-UGUUG-UGAc -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 21690 | 0.7 | 0.803743 |
Target: 5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3' miRNA: 3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 12483 | 0.7 | 0.803743 |
Target: 5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3' miRNA: 3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 15552 | 0.7 | 0.803743 |
Target: 5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3' miRNA: 3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 18621 | 0.7 | 0.803743 |
Target: 5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3' miRNA: 3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 24759 | 0.7 | 0.803743 |
Target: 5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3' miRNA: 3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 27828 | 0.7 | 0.803743 |
Target: 5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3' miRNA: 3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 30897 | 0.7 | 0.803743 |
Target: 5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3' miRNA: 3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 33965 | 0.7 | 0.803743 |
Target: 5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3' miRNA: 3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 42503 | 0.7 | 0.79473 |
Target: 5'- aGCUGCUgagCAuGGCCCcccaggaGGCAACGCUGg -3' miRNA: 3'- -CGACGGa--GUcCUGGGa------CUGUUGUGAC- -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 66007 | 0.7 | 0.79473 |
Target: 5'- cCUGCCUCccGGaGGCUCUGcgGCAGCGCUa -3' miRNA: 3'- cGACGGAG--UC-CUGGGAC--UGUUGUGAc -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 63351 | 0.7 | 0.785569 |
Target: 5'- --gGCC-CAGGACCUUGGCcgGugGCUGu -3' miRNA: 3'- cgaCGGaGUCCUGGGACUG--UugUGAC- -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 90596 | 0.7 | 0.776268 |
Target: 5'- aGCUgGCCUuguggCAGaGGCUCUGGCAGCACc- -3' miRNA: 3'- -CGA-CGGA-----GUC-CUGGGACUGUUGUGac -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 56420 | 0.7 | 0.757285 |
Target: 5'- gGCggagGCCgagCAGGGa-CUGGCGGCACUGu -3' miRNA: 3'- -CGa---CGGa--GUCCUggGACUGUUGUGAC- -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 92910 | 0.71 | 0.747621 |
Target: 5'- aCUGCCUUuuGGGCCUggccaaACAACACUGa -3' miRNA: 3'- cGACGGAGu-CCUGGGac----UGUUGUGAC- -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 133381 | 0.72 | 0.697955 |
Target: 5'- gGCUGCCcCAGGACC-UGGCggUAgUGc -3' miRNA: 3'- -CGACGGaGUCCUGGgACUGuuGUgAC- -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 59859 | 0.73 | 0.616037 |
Target: 5'- uGCUGCCUCAGGAaCCCUuuuGAU--CACUc -3' miRNA: 3'- -CGACGGAGUCCU-GGGA---CUGuuGUGAc -5' |
|||||||
33421 | 3' | -55 | NC_007605.1 | + | 3872 | 0.74 | 0.585295 |
Target: 5'- cGCUGCCUCAuaGCCCUaGCGACucuGCUGg -3' miRNA: 3'- -CGACGGAGUccUGGGAcUGUUG---UGAC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home