miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33421 3' -55 NC_007605.1 + 3712 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3745 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3791 1.11 0.002693
Target:  5'- cGCUGCCUCAGGACCCUGACAACACUGa -3'
miRNA:   3'- -CGACGGAGUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3826 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3872 0.74 0.585295
Target:  5'- cGCUGCCUCAuaGCCCUaGCGACucuGCUGg -3'
miRNA:   3'- -CGACGGAGUccUGGGAcUGUUG---UGAC- -5'
33421 3' -55 NC_007605.1 + 7633 0.69 0.838142
Target:  5'- cGCggGCCaCAGGugCCUGACggUGCc- -3'
miRNA:   3'- -CGa-CGGaGUCCugGGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 12483 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 15552 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 18621 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 21690 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 24759 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 27828 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 30897 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 33965 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 35657 0.68 0.883945
Target:  5'- -gUGCUUCAGGACCCacGCAAgGuCUGu -3'
miRNA:   3'- cgACGGAGUCCUGGGacUGUUgU-GAC- -5'
33421 3' -55 NC_007605.1 + 42503 0.7 0.79473
Target:  5'- aGCUGCUgagCAuGGCCCcccaggaGGCAACGCUGg -3'
miRNA:   3'- -CGACGGa--GUcCUGGGa------CUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 50053 0.8 0.281635
Target:  5'- cGCUGCUUCGGGACCCcagGACAuAC-CUGg -3'
miRNA:   3'- -CGACGGAGUCCUGGGa--CUGU-UGuGAC- -5'
33421 3' -55 NC_007605.1 + 56420 0.7 0.757285
Target:  5'- gGCggagGCCgagCAGGGa-CUGGCGGCACUGu -3'
miRNA:   3'- -CGa---CGGa--GUCCUggGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 57902 0.7 0.803743
Target:  5'- uGCUGCCaugCAcGGCCCUGaACAACgACUa -3'
miRNA:   3'- -CGACGGa--GUcCUGGGAC-UGUUG-UGAc -5'
33421 3' -55 NC_007605.1 + 58696 0.68 0.869522
Target:  5'- aCUGCCgugCAGGACCUcGGCcaGGgACUGa -3'
miRNA:   3'- cGACGGa--GUCCUGGGaCUG--UUgUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.