miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33421 3' -55 NC_007605.1 + 167266 0.67 0.910056
Target:  5'- cGCUGaUgUCAu-GCCCUGACAGCACg- -3'
miRNA:   3'- -CGAC-GgAGUccUGGGACUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 159251 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 156182 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 153113 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 150044 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 146975 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 143906 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 140837 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 137768 0.68 0.869522
Target:  5'- aGCUGCCggGGGGCCCUGcCuguCuCUGc -3'
miRNA:   3'- -CGACGGagUCCUGGGACuGuu-GuGAC- -5'
33421 3' -55 NC_007605.1 + 133381 0.72 0.697955
Target:  5'- gGCUGCCcCAGGACC-UGGCggUAgUGc -3'
miRNA:   3'- -CGACGGaGUCCUGGgACUGuuGUgAC- -5'
33421 3' -55 NC_007605.1 + 133256 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 133131 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 133006 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132881 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132756 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132632 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132507 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132382 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132257 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 132132 0.79 0.316421
Target:  5'- gGCUGCCcCAGGACCUggcGGCGGCGCa- -3'
miRNA:   3'- -CGACGGaGUCCUGGGa--CUGUUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.