miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33421 3' -55 NC_007605.1 + 90596 0.7 0.776268
Target:  5'- aGCUgGCCUuguggCAGaGGCUCUGGCAGCACc- -3'
miRNA:   3'- -CGA-CGGA-----GUC-CUGGGACUGUUGUGac -5'
33421 3' -55 NC_007605.1 + 64456 0.66 0.937337
Target:  5'- cGCggGUCUCAGGgcaGCCCUG-CAGCGg-- -3'
miRNA:   3'- -CGa-CGGAGUCC---UGGGACuGUUGUgac -5'
33421 3' -55 NC_007605.1 + 95145 0.67 0.910056
Target:  5'- aGCgGCCUcCAGGuCCaa-GCAGCACUGc -3'
miRNA:   3'- -CGaCGGA-GUCCuGGgacUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 58696 0.68 0.869522
Target:  5'- aCUGCCgugCAGGACCUcGGCcaGGgACUGa -3'
miRNA:   3'- cGACGGa--GUCCUGGGaCUG--UUgUGAC- -5'
33421 3' -55 NC_007605.1 + 72155 0.68 0.867283
Target:  5'- -aUGCCUCAGGcacgcaaaguuccuGCCCcgGGCAugGCa- -3'
miRNA:   3'- cgACGGAGUCC--------------UGGGa-CUGUugUGac -5'
33421 3' -55 NC_007605.1 + 118816 0.69 0.837317
Target:  5'- aGCUGCCccugaccagUUAGGACCCUuGACGgaugucuuuaacgGCGCg- -3'
miRNA:   3'- -CGACGG---------AGUCCUGGGA-CUGU-------------UGUGac -5'
33421 3' -55 NC_007605.1 + 33965 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 30897 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 27828 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 66007 0.7 0.79473
Target:  5'- cCUGCCUCccGGaGGCUCUGcgGCAGCGCUa -3'
miRNA:   3'- cGACGGAG--UC-CUGGGAC--UGUUGUGAc -5'
33421 3' -55 NC_007605.1 + 12483 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 15552 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 18621 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 21690 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 24759 0.7 0.803743
Target:  5'- uGCUGUCUCAGGAggggCCUGGCucCGCc- -3'
miRNA:   3'- -CGACGGAGUCCUg---GGACUGuuGUGac -5'
33421 3' -55 NC_007605.1 + 79508 0.65 0.95041
Target:  5'- -aUGUUaaggaugUCAGGGCUCUGAUuaaGACACUGc -3'
miRNA:   3'- cgACGG-------AGUCCUGGGACUG---UUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3712 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3745 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 3826 0.88 0.094611
Target:  5'- --gGCCcaCAGGACCCUGACAACACUGa -3'
miRNA:   3'- cgaCGGa-GUCCUGGGACUGUUGUGAC- -5'
33421 3' -55 NC_007605.1 + 50053 0.8 0.281635
Target:  5'- cGCUGCUUCGGGACCCcagGACAuAC-CUGg -3'
miRNA:   3'- -CGACGGAGUCCUGGGa--CUGU-UGuGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.