miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33421 5' -51.9 NC_007605.1 + 12501 0.66 0.990216
Target:  5'- uCACGGGGcCCCUGGCGGaGgaGAgcgGGCu -3'
miRNA:   3'- -GUGUCCU-GGGACUGUUgUgaCUa--CUG- -5'
33421 5' -51.9 NC_007605.1 + 118498 0.66 0.990216
Target:  5'- uGCuAGGACCCgaUGcCGACGgUGAUGGu -3'
miRNA:   3'- gUG-UCCUGGG--ACuGUUGUgACUACUg -5'
33421 5' -51.9 NC_007605.1 + 130136 0.66 0.989955
Target:  5'- gACAGGGCCacauaagacaagUGACAGCgcaGCUGAUaaaaGACa -3'
miRNA:   3'- gUGUCCUGGg-----------ACUGUUG---UGACUA----CUG- -5'
33421 5' -51.9 NC_007605.1 + 79838 0.66 0.988853
Target:  5'- gCACAGuGACUCgGGCAACA---GUGACa -3'
miRNA:   3'- -GUGUC-CUGGGaCUGUUGUgacUACUG- -5'
33421 5' -51.9 NC_007605.1 + 104729 0.66 0.988853
Target:  5'- uGCAGGGCCUcGuCGGCcaUGAUGGCc -3'
miRNA:   3'- gUGUCCUGGGaCuGUUGugACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 66281 0.66 0.987347
Target:  5'- cCAgGGGcGCCCccgUGGgAACGcCUGAUGGCg -3'
miRNA:   3'- -GUgUCC-UGGG---ACUgUUGU-GACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 57421 0.66 0.987347
Target:  5'- --aAGGAgCCCgGGCG--GCUGAUGGCg -3'
miRNA:   3'- gugUCCU-GGGaCUGUugUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 7639 0.66 0.985687
Target:  5'- cCACAGGugCCUGACGGugcCGCUccuuugcGGCa -3'
miRNA:   3'- -GUGUCCugGGACUGUU---GUGAcua----CUG- -5'
33421 5' -51.9 NC_007605.1 + 32021 0.66 0.985687
Target:  5'- aAC-GGACCCUGGCG--GCUGAcaGACc -3'
miRNA:   3'- gUGuCCUGGGACUGUugUGACUa-CUG- -5'
33421 5' -51.9 NC_007605.1 + 58204 0.66 0.985687
Target:  5'- uGCAGGACuauaCCUGGCGGCAggGaAUGAg -3'
miRNA:   3'- gUGUCCUG----GGACUGUUGUgaC-UACUg -5'
33421 5' -51.9 NC_007605.1 + 45440 0.66 0.983867
Target:  5'- gUACAGGcCCCUGcCGACGucccCUGG-GACa -3'
miRNA:   3'- -GUGUCCuGGGACuGUUGU----GACUaCUG- -5'
33421 5' -51.9 NC_007605.1 + 62610 0.67 0.981876
Target:  5'- aACuGGGCCCcGGuCAugAcCUGGUGGCa -3'
miRNA:   3'- gUGuCCUGGGaCU-GUugU-GACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 63354 0.67 0.979707
Target:  5'- -cCAGGACCUUGGCcgGugGCUGugGACu -3'
miRNA:   3'- guGUCCUGGGACUG--UugUGACuaCUG- -5'
33421 5' -51.9 NC_007605.1 + 52630 0.67 0.979707
Target:  5'- gCAgAGGGUCCUGGCGaguGCugUGGUGGu -3'
miRNA:   3'- -GUgUCCUGGGACUGU---UGugACUACUg -5'
33421 5' -51.9 NC_007605.1 + 42422 0.67 0.979707
Target:  5'- uGCGGGggcuaGCCCUGGgGACAgaGAgcgGGCu -3'
miRNA:   3'- gUGUCC-----UGGGACUgUUGUgaCUa--CUG- -5'
33421 5' -51.9 NC_007605.1 + 56431 0.68 0.965889
Target:  5'- aGCAGGGa-CUGGCGGCACUG-UGGg -3'
miRNA:   3'- gUGUCCUggGACUGUUGUGACuACUg -5'
33421 5' -51.9 NC_007605.1 + 90608 0.68 0.965889
Target:  5'- gGCAGaGGCUCUGGCAGCACcGGccACa -3'
miRNA:   3'- gUGUC-CUGGGACUGUUGUGaCUacUG- -5'
33421 5' -51.9 NC_007605.1 + 79520 0.68 0.965889
Target:  5'- -uCAGGGCUCUGAUuaaGACACUGccccgGGCc -3'
miRNA:   3'- guGUCCUGGGACUG---UUGUGACua---CUG- -5'
33421 5' -51.9 NC_007605.1 + 117931 0.68 0.962481
Target:  5'- gCGCGGGugCCUGGCugaaccuagcCGCUGcggcUGACg -3'
miRNA:   3'- -GUGUCCugGGACUGuu--------GUGACu---ACUG- -5'
33421 5' -51.9 NC_007605.1 + 58642 0.68 0.958842
Target:  5'- -uCAGGAagCUGGCcAgGCUGGUGACa -3'
miRNA:   3'- guGUCCUggGACUGuUgUGACUACUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.