miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33421 5' -51.9 NC_007605.1 + 3715 1.11 0.005723
Target:  5'- cCACAGGACCCUGACAACACUGAUGACa -3'
miRNA:   3'- -GUGUCCUGGGACUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 3829 1.11 0.005723
Target:  5'- cCACAGGACCCUGACAACACUGAUGACa -3'
miRNA:   3'- -GUGUCCUGGGACUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 3748 1.11 0.005723
Target:  5'- cCACAGGACCCUGACAACACUGAUGACa -3'
miRNA:   3'- -GUGUCCUGGGACUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 3798 1.03 0.017358
Target:  5'- -uCAGGACCCUGACAACACUGAUGACa -3'
miRNA:   3'- guGUCCUGGGACUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 72903 0.73 0.770979
Target:  5'- aCACuGGACCCaGGCGGCGCaUGA-GGCg -3'
miRNA:   3'- -GUGuCCUGGGaCUGUUGUG-ACUaCUG- -5'
33421 5' -51.9 NC_007605.1 + 7375 0.72 0.817413
Target:  5'- gACGuGGGCCCUGGcCAGC-CUGAcUGACu -3'
miRNA:   3'- gUGU-CCUGGGACU-GUUGuGACU-ACUG- -5'
33421 5' -51.9 NC_007605.1 + 122110 0.71 0.859415
Target:  5'- gACuGGGCuacggCCgugGACGGCGCUGAUGAUg -3'
miRNA:   3'- gUGuCCUG-----GGa--CUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 45144 0.71 0.867194
Target:  5'- gAUAGGuGCCaCUGAUauuGACAUUGAUGGCu -3'
miRNA:   3'- gUGUCC-UGG-GACUG---UUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 100722 0.71 0.874749
Target:  5'- aCGCGGGGCUCUG-CAcC-CUGGUGGCc -3'
miRNA:   3'- -GUGUCCUGGGACuGUuGuGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 34177 0.7 0.908991
Target:  5'- gCACuGGGCCCUGcuccuaaucACuuguGCugUGGUGGCu -3'
miRNA:   3'- -GUGuCCUGGGAC---------UGu---UGugACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 62947 0.7 0.920967
Target:  5'- uCGguGGAgauuCCCgUGGCggUGCUGGUGACa -3'
miRNA:   3'- -GUguCCU----GGG-ACUGuuGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 12548 0.69 0.931934
Target:  5'- aACGuGGCCCUGGCu-CGCUGcuGUGACg -3'
miRNA:   3'- gUGUcCUGGGACUGuuGUGAC--UACUG- -5'
33421 5' -51.9 NC_007605.1 + 105355 0.69 0.937039
Target:  5'- cCACGGGGgcgcCCCUGGCAG-AgaGGUGGCa -3'
miRNA:   3'- -GUGUCCU----GGGACUGUUgUgaCUACUG- -5'
33421 5' -51.9 NC_007605.1 + 63970 0.69 0.937039
Target:  5'- gCACAGGAUagguaugaUGGCcACAUUGAUGGCc -3'
miRNA:   3'- -GUGUCCUGgg------ACUGuUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 155617 0.68 0.954968
Target:  5'- uGCuGG-CCUUGAgGGCGCUGAgGACu -3'
miRNA:   3'- gUGuCCuGGGACUgUUGUGACUaCUG- -5'
33421 5' -51.9 NC_007605.1 + 37977 0.68 0.954968
Target:  5'- gGCAGGugCCUGACGu--CUGA-GAa -3'
miRNA:   3'- gUGUCCugGGACUGUuguGACUaCUg -5'
33421 5' -51.9 NC_007605.1 + 74486 0.68 0.958842
Target:  5'- cCACaAGGGCCUUGAUGACgACggggGcgGACa -3'
miRNA:   3'- -GUG-UCCUGGGACUGUUG-UGa---CuaCUG- -5'
33421 5' -51.9 NC_007605.1 + 58642 0.68 0.958842
Target:  5'- -uCAGGAagCUGGCcAgGCUGGUGACa -3'
miRNA:   3'- guGUCCUggGACUGuUgUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 117931 0.68 0.962481
Target:  5'- gCGCGGGugCCUGGCugaaccuagcCGCUGcggcUGACg -3'
miRNA:   3'- -GUGUCCugGGACUGuu--------GUGACu---ACUG- -5'
33421 5' -51.9 NC_007605.1 + 90608 0.68 0.965889
Target:  5'- gGCAGaGGCUCUGGCAGCACcGGccACa -3'
miRNA:   3'- gUGUC-CUGGGACUGUUGUGaCUacUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.