miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33421 5' -51.9 NC_007605.1 + 3715 1.11 0.005723
Target:  5'- cCACAGGACCCUGACAACACUGAUGACa -3'
miRNA:   3'- -GUGUCCUGGGACUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 3748 1.11 0.005723
Target:  5'- cCACAGGACCCUGACAACACUGAUGACa -3'
miRNA:   3'- -GUGUCCUGGGACUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 3798 1.03 0.017358
Target:  5'- -uCAGGACCCUGACAACACUGAUGACa -3'
miRNA:   3'- guGUCCUGGGACUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 3829 1.11 0.005723
Target:  5'- cCACAGGACCCUGACAACACUGAUGACa -3'
miRNA:   3'- -GUGUCCUGGGACUGUUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 7375 0.72 0.817413
Target:  5'- gACGuGGGCCCUGGcCAGC-CUGAcUGACu -3'
miRNA:   3'- gUGU-CCUGGGACU-GUUGuGACU-ACUG- -5'
33421 5' -51.9 NC_007605.1 + 7639 0.66 0.985687
Target:  5'- cCACAGGugCCUGACGGugcCGCUccuuugcGGCa -3'
miRNA:   3'- -GUGUCCugGGACUGUU---GUGAcua----CUG- -5'
33421 5' -51.9 NC_007605.1 + 12501 0.66 0.990216
Target:  5'- uCACGGGGcCCCUGGCGGaGgaGAgcgGGCu -3'
miRNA:   3'- -GUGUCCU-GGGACUGUUgUgaCUa--CUG- -5'
33421 5' -51.9 NC_007605.1 + 12548 0.69 0.931934
Target:  5'- aACGuGGCCCUGGCu-CGCUGcuGUGACg -3'
miRNA:   3'- gUGUcCUGGGACUGuuGUGAC--UACUG- -5'
33421 5' -51.9 NC_007605.1 + 32021 0.66 0.985687
Target:  5'- aAC-GGACCCUGGCG--GCUGAcaGACc -3'
miRNA:   3'- gUGuCCUGGGACUGUugUGACUa-CUG- -5'
33421 5' -51.9 NC_007605.1 + 34177 0.7 0.908991
Target:  5'- gCACuGGGCCCUGcuccuaaucACuuguGCugUGGUGGCu -3'
miRNA:   3'- -GUGuCCUGGGAC---------UGu---UGugACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 37977 0.68 0.954968
Target:  5'- gGCAGGugCCUGACGu--CUGA-GAa -3'
miRNA:   3'- gUGUCCugGGACUGUuguGACUaCUg -5'
33421 5' -51.9 NC_007605.1 + 42422 0.67 0.979707
Target:  5'- uGCGGGggcuaGCCCUGGgGACAgaGAgcgGGCu -3'
miRNA:   3'- gUGUCC-----UGGGACUgUUGUgaCUa--CUG- -5'
33421 5' -51.9 NC_007605.1 + 45144 0.71 0.867194
Target:  5'- gAUAGGuGCCaCUGAUauuGACAUUGAUGGCu -3'
miRNA:   3'- gUGUCC-UGG-GACUG---UUGUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 45440 0.66 0.983867
Target:  5'- gUACAGGcCCCUGcCGACGucccCUGG-GACa -3'
miRNA:   3'- -GUGUCCuGGGACuGUUGU----GACUaCUG- -5'
33421 5' -51.9 NC_007605.1 + 52630 0.67 0.979707
Target:  5'- gCAgAGGGUCCUGGCGaguGCugUGGUGGu -3'
miRNA:   3'- -GUgUCCUGGGACUGU---UGugACUACUg -5'
33421 5' -51.9 NC_007605.1 + 56431 0.68 0.965889
Target:  5'- aGCAGGGa-CUGGCGGCACUG-UGGg -3'
miRNA:   3'- gUGUCCUggGACUGUUGUGACuACUg -5'
33421 5' -51.9 NC_007605.1 + 57421 0.66 0.987347
Target:  5'- --aAGGAgCCCgGGCG--GCUGAUGGCg -3'
miRNA:   3'- gugUCCU-GGGaCUGUugUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 58204 0.66 0.985687
Target:  5'- uGCAGGACuauaCCUGGCGGCAggGaAUGAg -3'
miRNA:   3'- gUGUCCUG----GGACUGUUGUgaC-UACUg -5'
33421 5' -51.9 NC_007605.1 + 58642 0.68 0.958842
Target:  5'- -uCAGGAagCUGGCcAgGCUGGUGACa -3'
miRNA:   3'- guGUCCUggGACUGuUgUGACUACUG- -5'
33421 5' -51.9 NC_007605.1 + 62610 0.67 0.981876
Target:  5'- aACuGGGCCCcGGuCAugAcCUGGUGGCa -3'
miRNA:   3'- gUGuCCUGGGaCU-GUugU-GACUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.