miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33422 3' -61.2 NC_007605.1 + 125922 0.66 0.753034
Target:  5'- -aCGGCGGAgggaggCCCGCGAGcuuccaguUCCCCUCc -3'
miRNA:   3'- agGCCGUCUg-----GGGCGUUU--------AGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 68168 0.66 0.753034
Target:  5'- cUCCGGUAGAgCUCGUcgauGAUCUCCaCGa -3'
miRNA:   3'- -AGGCCGUCUgGGGCGu---UUAGGGGgGC- -5'
33422 3' -61.2 NC_007605.1 + 108877 0.66 0.753034
Target:  5'- gUCUGGgGacGACCCCGCug--CCCgCCUGc -3'
miRNA:   3'- -AGGCCgU--CUGGGGCGuuuaGGG-GGGC- -5'
33422 3' -61.2 NC_007605.1 + 10129 0.66 0.752118
Target:  5'- gUCGGCAGcgGCCUaCGCGGAggccaccUCCUCCCu -3'
miRNA:   3'- aGGCCGUC--UGGG-GCGUUU-------AGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 30983 0.66 0.743823
Target:  5'- cCCaGCGGACCCgGUggG-CCaCCCGg -3'
miRNA:   3'- aGGcCGUCUGGGgCGuuUaGGgGGGC- -5'
33422 3' -61.2 NC_007605.1 + 28092 0.66 0.743823
Target:  5'- --gGGCGGAgCCCGauccUCCCCCUc -3'
miRNA:   3'- aggCCGUCUgGGGCguuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 123161 0.66 0.742897
Target:  5'- cCCGGCucaggcaGGGCCCCcCGg--CCCCCaCGa -3'
miRNA:   3'- aGGCCG-------UCUGGGGcGUuuaGGGGG-GC- -5'
33422 3' -61.2 NC_007605.1 + 158167 0.66 0.74197
Target:  5'- -gCGGCGcACCCCGUuggccaggCCCCCGg -3'
miRNA:   3'- agGCCGUcUGGGGCGuuuag---GGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 12043 0.66 0.734523
Target:  5'- cCCGGCcucAGcaACCCUGCugcUCCCCUCc -3'
miRNA:   3'- aGGCCG---UC--UGGGGCGuuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 39965 0.66 0.734523
Target:  5'- gCCGGCugggggcugGGGUCCCGgGAcgCCCCCUc -3'
miRNA:   3'- aGGCCG---------UCUGGGGCgUUuaGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 15112 0.66 0.734523
Target:  5'- cCCGGCcucAGcaACCCUGCugcUCCCCUCc -3'
miRNA:   3'- aGGCCG---UC--UGGGGCGuuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 21250 0.66 0.734523
Target:  5'- cCCGGCcucAGcaACCCUGCugcUCCCCUCc -3'
miRNA:   3'- aGGCCG---UC--UGGGGCGuuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 24319 0.66 0.734523
Target:  5'- cCCGGCcucAGcaACCCUGCugcUCCCCUCc -3'
miRNA:   3'- aGGCCG---UC--UGGGGCGuuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 33526 0.66 0.734523
Target:  5'- cCCGGCcucAGcaACCCUGCugcUCCCCUCc -3'
miRNA:   3'- aGGCCG---UC--UGGGGCGuuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 27388 0.66 0.734523
Target:  5'- cCCGGCcucAGcaACCCUGCugcUCCCCUCc -3'
miRNA:   3'- aGGCCG---UC--UGGGGCGuuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 30457 0.66 0.734523
Target:  5'- cCCGGCcucAGcaACCCUGCugcUCCCCUCc -3'
miRNA:   3'- aGGCCG---UC--UGGGGCGuuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 18181 0.66 0.734523
Target:  5'- cCCGGCcucAGcaACCCUGCugcUCCCCUCc -3'
miRNA:   3'- aGGCCG---UC--UGGGGCGuuuAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 29398 0.66 0.726084
Target:  5'- gCCGGaacccCGGACCCgGCugcagccggccaCCCCCCGc -3'
miRNA:   3'- aGGCC-----GUCUGGGgCGuuua--------GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 28889 0.66 0.726084
Target:  5'- gCCGGaacccCGGACCCgGCugcagccggccaCCCCCCGc -3'
miRNA:   3'- aGGCC-----GUCUGGGgCGuuua--------GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 28990 0.66 0.726084
Target:  5'- gCCGGaacccCGGACCCgGCugcagccggccaCCCCCCGc -3'
miRNA:   3'- aGGCC-----GUCUGGGgCGuuua--------GGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.