miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33422 3' -61.2 NC_007605.1 + 2663 1.09 0.001203
Target:  5'- cUCCGGCAGACCCCGCAAAUCCCCCCGg -3'
miRNA:   3'- -AGGCCGUCUGGGGCGUUUAGGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 82631 0.78 0.157958
Target:  5'- aUCCauGGCAGGCCCCGCccucggaCCCCCGa -3'
miRNA:   3'- -AGG--CCGUCUGGGGCGuuuag--GGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 143910 0.78 0.173176
Target:  5'- gCCGGgGGGCCCUGCcugucucugCCCCCCGg -3'
miRNA:   3'- aGGCCgUCUGGGGCGuuua-----GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 140841 0.78 0.173176
Target:  5'- gCCGGgGGGCCCUGCcugucucugCCCCCCGg -3'
miRNA:   3'- aGGCCgUCUGGGGCGuuua-----GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 137772 0.78 0.173176
Target:  5'- gCCGGgGGGCCCUGCcugucucugCCCCCCGg -3'
miRNA:   3'- aGGCCgUCUGGGGCGuuua-----GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 146979 0.78 0.173176
Target:  5'- gCCGGgGGGCCCUGCcugucucugCCCCCCGg -3'
miRNA:   3'- aGGCCgUCUGGGGCGuuua-----GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 153117 0.78 0.173176
Target:  5'- gCCGGgGGGCCCUGCcugucucugCCCCCCGg -3'
miRNA:   3'- aGGCCgUCUGGGGCGuuua-----GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 156186 0.78 0.173176
Target:  5'- gCCGGgGGGCCCUGCcugucucugCCCCCCGg -3'
miRNA:   3'- aGGCCgUCUGGGGCGuuua-----GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 159255 0.78 0.173176
Target:  5'- gCCGGgGGGCCCUGCcugucucugCCCCCCGg -3'
miRNA:   3'- aGGCCgUCUGGGGCGuuua-----GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 150048 0.78 0.173176
Target:  5'- gCCGGgGGGCCCUGCcugucucugCCCCCCGg -3'
miRNA:   3'- aGGCCgUCUGGGGCGuuua-----GGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 127094 0.77 0.200818
Target:  5'- aCCGGCAGAUCCCGCAuugcgCCgCCUa -3'
miRNA:   3'- aGGCCGUCUGGGGCGUuua--GGgGGGc -5'
33422 3' -61.2 NC_007605.1 + 25686 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 13410 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 31824 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 28755 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 16479 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 22617 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 19548 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 68047 0.76 0.236558
Target:  5'- -aUGGuCAGGCUCCGU--GUCCCCCCGg -3'
miRNA:   3'- agGCC-GUCUGGGGCGuuUAGGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 47175 0.75 0.242079
Target:  5'- aUCCuGCAGACCCUgGCGGAUCCCaCCUu -3'
miRNA:   3'- -AGGcCGUCUGGGG-CGUUUAGGG-GGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.