miRNA display CGI


Results 1 - 20 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33422 3' -61.2 NC_007605.1 + 27710 0.7 0.485881
Target:  5'- cUCCGGgGGGCagagaCagGCAGggCCCCCCGg -3'
miRNA:   3'- -AGGCCgUCUGg----Gg-CGUUuaGGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 100700 0.71 0.432995
Target:  5'- aCCgGGCAGguaaacauggucACCCCGCccccAUCuCCCCCGg -3'
miRNA:   3'- aGG-CCGUC------------UGGGGCGuu--UAG-GGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 53755 0.71 0.459032
Target:  5'- cCCcGCAcGGCCUCGCAGAUgCCCCgGa -3'
miRNA:   3'- aGGcCGU-CUGGGGCGUUUAgGGGGgC- -5'
33422 3' -61.2 NC_007605.1 + 134340 0.7 0.483162
Target:  5'- -gCGGCAGACCCC-CAGGccUCCaucagcucucuuuuCCCCGg -3'
miRNA:   3'- agGCCGUCUGGGGcGUUU--AGG--------------GGGGC- -5'
33422 3' -61.2 NC_007605.1 + 12365 0.7 0.485881
Target:  5'- cUCCGGgGGGCagagaCagGCAGggCCCCCCGg -3'
miRNA:   3'- -AGGCCgUCUGg----Gg-CGUUuaGGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 15434 0.7 0.485881
Target:  5'- cUCCGGgGGGCagagaCagGCAGggCCCCCCGg -3'
miRNA:   3'- -AGGCCgUCUGg----Gg-CGUUuaGGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 18503 0.7 0.485881
Target:  5'- cUCCGGgGGGCagagaCagGCAGggCCCCCCGg -3'
miRNA:   3'- -AGGCCgUCUGg----Gg-CGUUuaGGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 21572 0.7 0.485881
Target:  5'- cUCCGGgGGGCagagaCagGCAGggCCCCCCGg -3'
miRNA:   3'- -AGGCCgUCUGg----Gg-CGUUuaGGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 24641 0.7 0.485881
Target:  5'- cUCCGGgGGGCagagaCagGCAGggCCCCCCGg -3'
miRNA:   3'- -AGGCCgUCUGg----Gg-CGUUuaGGGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 60876 0.72 0.398845
Target:  5'- cCCGGCaucggagGGGCCCCGUcauAGAUCUCCCa- -3'
miRNA:   3'- aGGCCG-------UCUGGGGCG---UUUAGGGGGgc -5'
33422 3' -61.2 NC_007605.1 + 115794 0.72 0.391582
Target:  5'- -gCGGCAGACCCuCGUGAGaCCCgUCCGg -3'
miRNA:   3'- agGCCGUCUGGG-GCGUUUaGGG-GGGC- -5'
33422 3' -61.2 NC_007605.1 + 82544 0.73 0.338119
Target:  5'- aUCCauGGCAGGCCCUGCccucaggCCCCCGa -3'
miRNA:   3'- -AGG--CCGUCUGGGGCGuuuag--GGGGGC- -5'
33422 3' -61.2 NC_007605.1 + 13410 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 16479 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 19548 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 22617 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 25686 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 28755 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 31824 0.77 0.20562
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCCu -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGc -5'
33422 3' -61.2 NC_007605.1 + 34893 0.75 0.253442
Target:  5'- gCCGGCcggagGGACCCCgGCGgcccggugucAGUCCCCCUGc -3'
miRNA:   3'- aGGCCG-----UCUGGGG-CGU----------UUAGGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.