miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33422 5' -48.6 NC_007605.1 + 123426 0.66 0.99962
Target:  5'- cUCCCGGGGAucgagcucGCugGCGUgagACUg-GGCc -3'
miRNA:   3'- -AGGGUUCUU--------UGugCGCAa--UGAgaCUG- -5'
33422 5' -48.6 NC_007605.1 + 167588 0.66 0.99962
Target:  5'- gCCCAGGccACGCGCGUagucACUCg--- -3'
miRNA:   3'- aGGGUUCuuUGUGCGCAa---UGAGacug -5'
33422 5' -48.6 NC_007605.1 + 86393 0.66 0.999523
Target:  5'- -gCCGGGGAACGgGCGgcAC-CUGAg -3'
miRNA:   3'- agGGUUCUUUGUgCGCaaUGaGACUg -5'
33422 5' -48.6 NC_007605.1 + 98228 0.66 0.999523
Target:  5'- gCCCGGG-AGCugGUGgaGCUCgcgcgcUGGCa -3'
miRNA:   3'- aGGGUUCuUUGugCGCaaUGAG------ACUG- -5'
33422 5' -48.6 NC_007605.1 + 89761 0.66 0.999265
Target:  5'- -aCCAGGGAACAUcUGcUGCUCUGGu -3'
miRNA:   3'- agGGUUCUUUGUGcGCaAUGAGACUg -5'
33422 5' -48.6 NC_007605.1 + 149666 0.66 0.999265
Target:  5'- cCCCGAGGAggcGCcagGCGCGggGCcggucggCUGGCu -3'
miRNA:   3'- aGGGUUCUU---UG---UGCGCaaUGa------GACUG- -5'
33422 5' -48.6 NC_007605.1 + 70289 0.67 0.998655
Target:  5'- gCCCAGGggGCucuacuCGgGaguCUCUGGCc -3'
miRNA:   3'- aGGGUUCuuUGu-----GCgCaauGAGACUG- -5'
33422 5' -48.6 NC_007605.1 + 66412 0.67 0.998374
Target:  5'- aCCCGGGuucuccuACACGCGgccg-CUGACc -3'
miRNA:   3'- aGGGUUCuu-----UGUGCGCaaugaGACUG- -5'
33422 5' -48.6 NC_007605.1 + 135803 0.68 0.997217
Target:  5'- gCCUggGAuAACACGCGUcccuuggCUGACc -3'
miRNA:   3'- aGGGuuCU-UUGUGCGCAauga---GACUG- -5'
33422 5' -48.6 NC_007605.1 + 74574 0.68 0.996704
Target:  5'- cUCCCA---GACugGuCGUgcugcggGCUCUGGCu -3'
miRNA:   3'- -AGGGUucuUUGugC-GCAa------UGAGACUG- -5'
33422 5' -48.6 NC_007605.1 + 124205 0.68 0.995373
Target:  5'- gUCUCGGGggGCACGUGUUccacccgugaaugGCUCccGCg -3'
miRNA:   3'- -AGGGUUCuuUGUGCGCAA-------------UGAGacUG- -5'
33422 5' -48.6 NC_007605.1 + 87249 0.69 0.99382
Target:  5'- gCCUggGAuuCAgGCGUgGCUCUuGGCu -3'
miRNA:   3'- aGGGuuCUuuGUgCGCAaUGAGA-CUG- -5'
33422 5' -48.6 NC_007605.1 + 35825 0.69 0.992848
Target:  5'- -gCCAAGGGACGCGUGUUAUccCaGGCu -3'
miRNA:   3'- agGGUUCUUUGUGCGCAAUGa-GaCUG- -5'
33422 5' -48.6 NC_007605.1 + 16967 0.69 0.991758
Target:  5'- cCCCGAGggGCGCagGCG--GCUC-GGCa -3'
miRNA:   3'- aGGGUUCuuUGUG--CGCaaUGAGaCUG- -5'
33422 5' -48.6 NC_007605.1 + 29577 0.69 0.990541
Target:  5'- gCCCAAGggGguuCGCGUUGCUa-GGCc -3'
miRNA:   3'- aGGGUUCuuUgu-GCGCAAUGAgaCUG- -5'
33422 5' -48.6 NC_007605.1 + 14232 0.69 0.990541
Target:  5'- gCCCAAGggGguuCGCGUUGCUa-GGCc -3'
miRNA:   3'- aGGGUUCuuUgu-GCGCAAUGAgaCUG- -5'
33422 5' -48.6 NC_007605.1 + 17301 0.69 0.990541
Target:  5'- gCCCAAGggGguuCGCGUUGCUa-GGCc -3'
miRNA:   3'- aGGGUUCuuUgu-GCGCAAUGAgaCUG- -5'
33422 5' -48.6 NC_007605.1 + 20370 0.69 0.990541
Target:  5'- gCCCAAGggGguuCGCGUUGCUa-GGCc -3'
miRNA:   3'- aGGGUUCuuUgu-GCGCAAUGAgaCUG- -5'
33422 5' -48.6 NC_007605.1 + 23439 0.69 0.990541
Target:  5'- gCCCAAGggGguuCGCGUUGCUa-GGCc -3'
miRNA:   3'- aGGGUUCuuUgu-GCGCAAUGAgaCUG- -5'
33422 5' -48.6 NC_007605.1 + 26508 0.69 0.990541
Target:  5'- gCCCAAGggGguuCGCGUUGCUa-GGCc -3'
miRNA:   3'- aGGGUUCuuUgu-GCGCAAUGAgaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.