miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33423 3' -62.7 NC_007605.1 + 152921 0.66 0.643169
Target:  5'- aGCCCCCCGuccUGCUauCCcGCucgucGCCGCGc -3'
miRNA:   3'- -CGGGGGGU---ACGG--GGuCGuu---CGGCGUc -5'
33423 3' -62.7 NC_007605.1 + 122407 0.66 0.643169
Target:  5'- gGUCCCUgauCAUGCCCaCGGUggGgCGgAGg -3'
miRNA:   3'- -CGGGGG---GUACGGG-GUCGuuCgGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 47028 0.66 0.633356
Target:  5'- -aUCCCCGaGaCCCCGGuCGAGUaCGCAGa -3'
miRNA:   3'- cgGGGGGUaC-GGGGUC-GUUCG-GCGUC- -5'
33423 3' -62.7 NC_007605.1 + 59212 0.66 0.633356
Target:  5'- cGCCCCCCuucugGUCCggggucuuacgCGGCuGGCgGCGGc -3'
miRNA:   3'- -CGGGGGGua---CGGG-----------GUCGuUCGgCGUC- -5'
33423 3' -62.7 NC_007605.1 + 104669 0.66 0.633356
Target:  5'- cGCCgCCCGgggGCCagucuCCGGguCAGGUCGCGGa -3'
miRNA:   3'- -CGGgGGGUa--CGG-----GGUC--GUUCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 141895 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 141284 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 162981 0.66 0.623542
Target:  5'- gGCCcaCCCCA-GCCCgagaAGCAgggucGGCgGCAGg -3'
miRNA:   3'- -CGG--GGGGUaCGGGg---UCGU-----UCGgCGUC- -5'
33423 3' -62.7 NC_007605.1 + 140774 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 141590 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 140978 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 141182 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 141080 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 142201 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 140876 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 142507 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 141386 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 142099 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 142609 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 142303 0.66 0.623542
Target:  5'- cGCUgCCCc-GCUCCGGCGggggguggccGGCUGCAGc -3'
miRNA:   3'- -CGGgGGGuaCGGGGUCGU----------UCGGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.