miRNA display CGI


Results 1 - 20 of 281 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33423 3' -62.7 NC_007605.1 + 28 0.67 0.554416
Target:  5'- cCCCCCCAUGCCCCcGCcaacaccccccccGAuGCCcccCGGg -3'
miRNA:   3'- cGGGGGGUACGGGGuCG-------------UU-CGGc--GUC- -5'
33423 3' -62.7 NC_007605.1 + 216 0.66 0.60394
Target:  5'- cGCCCCCCuuggggGCUuggCUGGCGcGGCCGgGGg -3'
miRNA:   3'- -CGGGGGGua----CGG---GGUCGU-UCGGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 574 0.75 0.19227
Target:  5'- gGCCCCCCAUGCCCCAccccccgauGCcccCCGgGGg -3'
miRNA:   3'- -CGGGGGGUACGGGGU---------CGuucGGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 754 0.66 0.60394
Target:  5'- cGCCCCCCuuggggGCUuggCUGGCGcGGCCGgGGg -3'
miRNA:   3'- -CGGGGGGua----CGG---GGUCGU-UCGGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 1111 0.76 0.162349
Target:  5'- gGCCCCCCAUGCCCCAcGgGGGUCu--- -3'
miRNA:   3'- -CGGGGGGUACGGGGU-CgUUCGGcguc -5'
33423 3' -62.7 NC_007605.1 + 1276 0.66 0.60394
Target:  5'- cGCCCCCCuuggggGCUuggCUGGCGcGGCCGgGGg -3'
miRNA:   3'- -CGGGGGGua----CGG---GGUCGU-UCGGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 1634 0.75 0.19227
Target:  5'- gGCCCCCCAUGCCCCAccccccgauGCcccCCGgGGg -3'
miRNA:   3'- -CGGGGGGUACGGGGU---------CGuucGGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 1814 0.66 0.60394
Target:  5'- cGCCCCCCuuggggGCUuggCUGGCGcGGCCGgGGg -3'
miRNA:   3'- -CGGGGGGua----CGG---GGUCGU-UCGGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 2171 1.08 0.000787
Target:  5'- gGCCCCCCAUGCCCCAGCAAGCCGCAGc -3'
miRNA:   3'- -CGGGGGGUACGGGGUCGUUCGGCGUC- -5'
33423 3' -62.7 NC_007605.1 + 2954 0.7 0.386291
Target:  5'- gGCCCCuCCGUGCCCCuacgccgaaAGUucaugggcacagGGGCCguGCAGa -3'
miRNA:   3'- -CGGGG-GGUACGGGG---------UCG------------UUCGG--CGUC- -5'
33423 3' -62.7 NC_007605.1 + 3062 0.77 0.140109
Target:  5'- cGCCCCCCggGCCCCAGU--GCUGUg- -3'
miRNA:   3'- -CGGGGGGuaCGGGGUCGuuCGGCGuc -5'
33423 3' -62.7 NC_007605.1 + 5006 0.7 0.378352
Target:  5'- gGCCagggaCUC-UGCCCUGGCAGGCCGUg- -3'
miRNA:   3'- -CGGg----GGGuACGGGGUCGUUCGGCGuc -5'
33423 3' -62.7 NC_007605.1 + 10083 0.68 0.471397
Target:  5'- uGCCCgCCCGUGacuacCCCCAcGUAcugGGCaCGCGGg -3'
miRNA:   3'- -CGGG-GGGUAC-----GGGGU-CGU---UCG-GCGUC- -5'
33423 3' -62.7 NC_007605.1 + 10348 0.67 0.536252
Target:  5'- gGCCCCCgGggcuggGCUgCgcaAGCAGGCCGgGGg -3'
miRNA:   3'- -CGGGGGgUa-----CGGgG---UCGUUCGGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 10761 0.68 0.517362
Target:  5'- gGCCCCCagAUGCCCCccaccAGuCAcccGGCCGUg- -3'
miRNA:   3'- -CGGGGGg-UACGGGG-----UC-GU---UCGGCGuc -5'
33423 3' -62.7 NC_007605.1 + 12030 0.68 0.48043
Target:  5'- gGUCCCCCuggaccccgGCCUCAGCAAcccuGCUGCu- -3'
miRNA:   3'- -CGGGGGGua-------CGGGGUCGUU----CGGCGuc -5'
33423 3' -62.7 NC_007605.1 + 12103 0.67 0.552495
Target:  5'- gGCgUCCCgggagagcccggagGUGCCCCGGCcGGCUGgGGc -3'
miRNA:   3'- -CGgGGGG--------------UACGGGGUCGuUCGGCgUC- -5'
33423 3' -62.7 NC_007605.1 + 12119 0.72 0.291886
Target:  5'- cCUCCCCcgGuCCCCAGUAgGGCCGCc- -3'
miRNA:   3'- cGGGGGGuaC-GGGGUCGU-UCGGCGuc -5'
33423 3' -62.7 NC_007605.1 + 12146 0.7 0.362806
Target:  5'- uGCCCCCC-UGCaCCCAGUAccugccccucuuGGCCacGCAc -3'
miRNA:   3'- -CGGGGGGuACG-GGGUCGU------------UCGG--CGUc -5'
33423 3' -62.7 NC_007605.1 + 12388 0.68 0.471397
Target:  5'- gGCCCCCCGgcagcugGCCCCgAGgAGGCgCcCGGa -3'
miRNA:   3'- -CGGGGGGUa------CGGGG-UCgUUCG-GcGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.