miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33423 5' -55.3 NC_007605.1 + 75303 0.66 0.947837
Target:  5'- cCCUGUCUCcccucgaGCGcCUCGCuCAGCCc -3'
miRNA:   3'- cGGACGGAGuac----UGU-GAGCGuGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 44894 0.66 0.947837
Target:  5'- uGUCUGCC-CGUG-CACUCagauauggugGCaguuGCGGCCu -3'
miRNA:   3'- -CGGACGGaGUACuGUGAG----------CG----UGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 9565 0.66 0.947837
Target:  5'- aCCUGCCagAccugGACGCggcccUGCAgGGCCg -3'
miRNA:   3'- cGGACGGagUa---CUGUGa----GCGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 150707 0.66 0.946976
Target:  5'- gGCUgcGUCUCGUGACAUggccaggccuggUGC-CAGCCg -3'
miRNA:   3'- -CGGa-CGGAGUACUGUGa-----------GCGuGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 65285 0.66 0.945225
Target:  5'- cGCgCUGCCUgGUGAaugcgccucuggcggUGCggGCACAGCg -3'
miRNA:   3'- -CG-GACGGAgUACU---------------GUGagCGUGUCGg -5'
33423 5' -55.3 NC_007605.1 + 90132 0.66 0.943437
Target:  5'- aGCCUGUgUCAggGAUgGCUCcCAgGGCCg -3'
miRNA:   3'- -CGGACGgAGUa-CUG-UGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 20920 0.66 0.943437
Target:  5'- gGCCUGgC-CAUGuCACgagaCGCAGCCu -3'
miRNA:   3'- -CGGACgGaGUACuGUGagc-GUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 92653 0.66 0.943437
Target:  5'- aGCCUGCgUC-UGACACcaCGUcCAGUg -3'
miRNA:   3'- -CGGACGgAGuACUGUGa-GCGuGUCGg -5'
33423 5' -55.3 NC_007605.1 + 12465 0.66 0.943437
Target:  5'- aCCUGCac----GCGCUgaCGCACAGCCu -3'
miRNA:   3'- cGGACGgaguacUGUGA--GCGUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 117151 0.66 0.943437
Target:  5'- gGCCUuuagcaccgaGCUgauggGUGACACcuccUCGCugAGCCa -3'
miRNA:   3'- -CGGA----------CGGag---UACUGUG----AGCGugUCGG- -5'
33423 5' -55.3 NC_007605.1 + 85574 0.66 0.943437
Target:  5'- gGCC-GCCUCAgcggUGACACagGCAC--CCa -3'
miRNA:   3'- -CGGaCGGAGU----ACUGUGagCGUGucGG- -5'
33423 5' -55.3 NC_007605.1 + 19852 0.66 0.938802
Target:  5'- aGCCUGCCUCGaguagGuGC-CUC-CAgAGCCc -3'
miRNA:   3'- -CGGACGGAGUa----C-UGuGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 16783 0.66 0.938802
Target:  5'- aGCCUGCCUCGaguagGuGC-CUC-CAgAGCCc -3'
miRNA:   3'- -CGGACGGAGUa----C-UGuGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 25989 0.66 0.938802
Target:  5'- aGCCUGCCUCGaguagGuGC-CUC-CAgAGCCc -3'
miRNA:   3'- -CGGACGGAGUa----C-UGuGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 22921 0.66 0.938802
Target:  5'- aGCCUGCCUCGaguagGuGC-CUC-CAgAGCCc -3'
miRNA:   3'- -CGGACGGAGUa----C-UGuGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 13714 0.66 0.938802
Target:  5'- aGCCUGCCUCGaguagGuGC-CUC-CAgAGCCc -3'
miRNA:   3'- -CGGACGGAGUa----C-UGuGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 32127 0.66 0.938802
Target:  5'- aGCCUGCCUCGaguagGuGC-CUC-CAgAGCCc -3'
miRNA:   3'- -CGGACGGAGUa----C-UGuGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 35196 0.66 0.938802
Target:  5'- aGCCUGCCUCGaguagGuGC-CUC-CAgAGCCc -3'
miRNA:   3'- -CGGACGGAGUa----C-UGuGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 29058 0.66 0.938802
Target:  5'- aGCCUGCCUCGaguagGuGC-CUC-CAgAGCCc -3'
miRNA:   3'- -CGGACGGAGUa----C-UGuGAGcGUgUCGG- -5'
33423 5' -55.3 NC_007605.1 + 28376 0.66 0.937365
Target:  5'- cGCCaGCgUCGUccaGACGCUCGgGgggugcacaccuccCAGCCg -3'
miRNA:   3'- -CGGaCGgAGUA---CUGUGAGCgU--------------GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.