miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33423 5' -55.3 NC_007605.1 + 28376 0.66 0.937365
Target:  5'- cGCCaGCgUCGUccaGACGCUCGgGgggugcacaccuccCAGCCg -3'
miRNA:   3'- -CGGaCGgAGUA---CUGUGAGCgU--------------GUCGG- -5'
33423 5' -55.3 NC_007605.1 + 39018 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 39143 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 39268 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 39393 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 39518 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 39643 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 38769 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 38644 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 38519 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 38394 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 38269 0.66 0.93393
Target:  5'- aGCCggGgUUCcUGGCGCUCcggGgGCAGCCg -3'
miRNA:   3'- -CGGa-CgGAGuACUGUGAG---CgUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 164906 0.66 0.92882
Target:  5'- uCCUguugGCCUCcuGUGugGC-CGC-CGGCCa -3'
miRNA:   3'- cGGA----CGGAG--UACugUGaGCGuGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 44297 0.66 0.92882
Target:  5'- aUCUGUCcCgAUGGCAggUGCACGGCCc -3'
miRNA:   3'- cGGACGGaG-UACUGUgaGCGUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 61517 0.66 0.92882
Target:  5'- gGCCUGaCCUCGUGugGCgagagucCGUgcguggaugucACGGCg -3'
miRNA:   3'- -CGGAC-GGAGUACugUGa------GCG-----------UGUCGg -5'
33423 5' -55.3 NC_007605.1 + 135068 0.66 0.923471
Target:  5'- aCCUGgCUCAgguccGGCGCccUGCGCAGUCc -3'
miRNA:   3'- cGGACgGAGUa----CUGUGa-GCGUGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 21511 0.67 0.917883
Target:  5'- aGCaCUaGCgUCccGGCGCUCGUcguucaggaACAGCCu -3'
miRNA:   3'- -CG-GA-CGgAGuaCUGUGAGCG---------UGUCGG- -5'
33423 5' -55.3 NC_007605.1 + 90596 0.67 0.917883
Target:  5'- aGCUgGCCUUGUGGCagagGCUCuggcaGCAcCGGCCa -3'
miRNA:   3'- -CGGaCGGAGUACUG----UGAG-----CGU-GUCGG- -5'
33423 5' -55.3 NC_007605.1 + 52156 0.67 0.917883
Target:  5'- gGCCUGCUUCAcaa-AgUCGCGCAGgUa -3'
miRNA:   3'- -CGGACGGAGUacugUgAGCGUGUCgG- -5'
33423 5' -55.3 NC_007605.1 + 48422 0.67 0.917883
Target:  5'- -aCUGCCU-AUGACACU-GCcuaucCAGCCu -3'
miRNA:   3'- cgGACGGAgUACUGUGAgCGu----GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.