Results 21 - 40 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 76711 | 0.68 | 0.934753 |
Target: 5'- ---aCUGAGAGCaUGuCUGCUGG-GGCu -3' miRNA: 3'- uaacGACUCUUGgAC-GACGAUCaCCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 92419 | 0.68 | 0.934753 |
Target: 5'- gGUUGCUGGGGGCCUGgaugaagaauCUGUcAGUGa- -3' miRNA: 3'- -UAACGACUCUUGGAC----------GACGaUCACcg -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 1110 | 0.68 | 0.91814 |
Target: 5'- cUUGUUGcuAGCCUccgcGCUaaucGCUGGUGGCa -3' miRNA: 3'- uAACGACucUUGGA----CGA----CGAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 94475 | 0.68 | 0.912087 |
Target: 5'- -gUGCUGAcccuucugCUGCUGCUGGUcauGGCg -3' miRNA: 3'- uaACGACUcuug----GACGACGAUCA---CCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 125989 | 0.69 | 0.885344 |
Target: 5'- aGUUGCUGcGucCCUGCUGCcGGaGGUg -3' miRNA: 3'- -UAACGACuCuuGGACGACGaUCaCCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 116295 | 0.69 | 0.885344 |
Target: 5'- --cGCUG-GAGCCaGCgcgcCUAGUGGCc -3' miRNA: 3'- uaaCGACuCUUGGaCGac--GAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 122165 | 0.69 | 0.878043 |
Target: 5'- -aUGCggcgGccuGAGCCUGCUGgacgggGGUGGCg -3' miRNA: 3'- uaACGa---Cu--CUUGGACGACga----UCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 4658 | 0.69 | 0.878043 |
Target: 5'- --cGCUGc--GCCUGCUGCUGGgaaccUGGUc -3' miRNA: 3'- uaaCGACucuUGGACGACGAUC-----ACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 78167 | 0.69 | 0.878043 |
Target: 5'- -cUGCUGGGG---UGggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCUuggACgaCGAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 78209 | 0.69 | 0.878043 |
Target: 5'- -cUGCUGGGG---UGggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCUuggACgaCGAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 9088 | 0.7 | 0.870505 |
Target: 5'- --aGCUGAaccaGAACCUGCUGg-AGcGGCu -3' miRNA: 3'- uaaCGACU----CUUGGACGACgaUCaCCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 11847 | 0.71 | 0.811662 |
Target: 5'- -gUGCgGGGGGCCUGCgaggaggcGCUGGcgggGGCa -3' miRNA: 3'- uaACGaCUCUUGGACGa-------CGAUCa---CCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 72416 | 0.71 | 0.802483 |
Target: 5'- gAUUGCUGAa---CUGggGCUGGUGGCc -3' miRNA: 3'- -UAACGACUcuugGACgaCGAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 2368 | 0.71 | 0.799696 |
Target: 5'- --aGCUGAauGAguggguguuuggugGCaggGCUGCUGGUGGCa -3' miRNA: 3'- uaaCGACU--CU--------------UGga-CGACGAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 139081 | 0.72 | 0.754284 |
Target: 5'- uUUGgUG-GGACCugaUGCUGCUGGUGuGCu -3' miRNA: 3'- uAACgACuCUUGG---ACGACGAUCAC-CG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 78104 | 0.74 | 0.657882 |
Target: 5'- -cUGCUGAGGuaggACUUGUUuuucccaaggugggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 78041 | 0.74 | 0.625989 |
Target: 5'- -cUGCUGAGGugggGCUUGUUuuucccaaggugggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 77978 | 0.74 | 0.625989 |
Target: 5'- -cUGCUGAGGugggGCUUGUUuuucccaaggugggGCUGGUGGCa -3' miRNA: 3'- uaACGACUCU----UGGACGA--------------CGAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 134564 | 0.78 | 0.445382 |
Target: 5'- --gGCUGugcuGGugCUGCUGgUGGUGGCa -3' miRNA: 3'- uaaCGACu---CUugGACGACgAUCACCG- -5' |
|||||||
33424 | 3' | -52.7 | NC_007605.1 | + | 33376 | 0.78 | 0.426702 |
Target: 5'- uGUUGCUGAGGagcuucuuagGCCUGCUGCcacucGUGGUu -3' miRNA: 3'- -UAACGACUCU----------UGGACGACGau---CACCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home