miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33424 5' -54 NC_007605.1 + 84639 0.66 0.964534
Target:  5'- aGUACC-ACAACagcCCCGGGCUggCAGa -3'
miRNA:   3'- -CGUGGuUGUUGcuaGGGUCCGGa-GUC- -5'
33424 5' -54 NC_007605.1 + 23097 0.66 0.964534
Target:  5'- gGCugCAGCAACG--CCCAGGgacauCCcCAGa -3'
miRNA:   3'- -CGugGUUGUUGCuaGGGUCC-----GGaGUC- -5'
33424 5' -54 NC_007605.1 + 54042 0.66 0.964534
Target:  5'- aGCGCCcgGACcuCGGccgCCUcGGCCUCGGu -3'
miRNA:   3'- -CGUGG--UUGuuGCUa--GGGuCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 72466 0.66 0.964534
Target:  5'- -gACCGGC-GCGGgagCCgGcGGCCUCGGa -3'
miRNA:   3'- cgUGGUUGuUGCUa--GGgU-CCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 97884 0.66 0.961108
Target:  5'- aCGCCuACAggggGCGccuUCCCcuGGCCUCGGc -3'
miRNA:   3'- cGUGGuUGU----UGCu--AGGGu-CCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 19690 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 22759 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 25828 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 28897 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 31965 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 35034 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 16621 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 13552 0.66 0.961108
Target:  5'- cGC-CCGuCcACGGcUCCCGGGCC-CAGc -3'
miRNA:   3'- -CGuGGUuGuUGCU-AGGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 62427 0.66 0.961108
Target:  5'- uGCGCCGguacGCGGCcgccaGggCCCGGGUCUCu- -3'
miRNA:   3'- -CGUGGU----UGUUG-----CuaGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 22567 0.66 0.961108
Target:  5'- -gGCCAgaGCAugG--CCCAGGCCUUu- -3'
miRNA:   3'- cgUGGU--UGUugCuaGGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 106471 0.66 0.961108
Target:  5'- cGCGCCAAaagugGGCG-UUgCAGGCCUCc- -3'
miRNA:   3'- -CGUGGUUg----UUGCuAGgGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 35627 0.66 0.961108
Target:  5'- gGCGgCGAUAGaCGGUUCCAGGUCacuaaagugcuUCAGg -3'
miRNA:   3'- -CGUgGUUGUU-GCUAGGGUCCGG-----------AGUC- -5'
33424 5' -54 NC_007605.1 + 109153 0.66 0.961108
Target:  5'- -gGCCAcCGACGAUCCgCuggacGGCuCUCGGc -3'
miRNA:   3'- cgUGGUuGUUGCUAGG-Gu----CCG-GAGUC- -5'
33424 5' -54 NC_007605.1 + 169486 0.66 0.95746
Target:  5'- aGCACguACGugGcgCCCAGGagucgCAGg -3'
miRNA:   3'- -CGUGguUGUugCuaGGGUCCgga--GUC- -5'
33424 5' -54 NC_007605.1 + 113669 0.67 0.953584
Target:  5'- cCACCAAgGGCGucgagcggCgCAGcGCCUCAGa -3'
miRNA:   3'- cGUGGUUgUUGCua------GgGUC-CGGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.