miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33426 3' -62.5 NC_007605.1 + 134671 0.66 0.673036
Target:  5'- uGGGCUaccUGGCCUCcCCGgugGCCCCa- -3'
miRNA:   3'- -CCUGAcu-GCCGGGGaGGCa--CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 59600 0.66 0.663344
Target:  5'- uGGA-UGugGGCCCuCUUCuacgGCCCCa- -3'
miRNA:   3'- -CCUgACugCCGGG-GAGGca--CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 151104 0.66 0.662373
Target:  5'- uGGGCgGcCGcagccuGCCCCUcggcggcCCGUGCCCCa- -3'
miRNA:   3'- -CCUGaCuGC------CGGGGA-------GGCACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 15447 0.66 0.653629
Target:  5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3'
miRNA:   3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 24654 0.66 0.653629
Target:  5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3'
miRNA:   3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 18516 0.66 0.653629
Target:  5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3'
miRNA:   3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 33861 0.66 0.653629
Target:  5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3'
miRNA:   3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 30792 0.66 0.653629
Target:  5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3'
miRNA:   3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 12378 0.66 0.653629
Target:  5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3'
miRNA:   3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 21585 0.66 0.653629
Target:  5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3'
miRNA:   3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 27723 0.66 0.653629
Target:  5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3'
miRNA:   3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5'
33426 3' -62.5 NC_007605.1 + 133083 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 132833 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 132584 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 132084 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 132459 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 132209 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 131959 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 133208 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 132334 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.