Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33426 | 3' | -62.5 | NC_007605.1 | + | 134671 | 0.66 | 0.673036 |
Target: 5'- uGGGCUaccUGGCCUCcCCGgugGCCCCa- -3' miRNA: 3'- -CCUGAcu-GCCGGGGaGGCa--CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 59600 | 0.66 | 0.663344 |
Target: 5'- uGGA-UGugGGCCCuCUUCuacgGCCCCa- -3' miRNA: 3'- -CCUgACugCCGGG-GAGGca--CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 151104 | 0.66 | 0.662373 |
Target: 5'- uGGGCgGcCGcagccuGCCCCUcggcggcCCGUGCCCCa- -3' miRNA: 3'- -CCUGaCuGC------CGGGGA-------GGCACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 15447 | 0.66 | 0.653629 |
Target: 5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3' miRNA: 3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 24654 | 0.66 | 0.653629 |
Target: 5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3' miRNA: 3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 18516 | 0.66 | 0.653629 |
Target: 5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3' miRNA: 3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 33861 | 0.66 | 0.653629 |
Target: 5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3' miRNA: 3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 30792 | 0.66 | 0.653629 |
Target: 5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3' miRNA: 3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 12378 | 0.66 | 0.653629 |
Target: 5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3' miRNA: 3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 21585 | 0.66 | 0.653629 |
Target: 5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3' miRNA: 3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 27723 | 0.66 | 0.653629 |
Target: 5'- aGACaGGCagGGCCCC-CCGgcagcugGCCCCg- -3' miRNA: 3'- cCUGaCUG--CCGGGGaGGCa------CGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 133083 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 132833 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 132584 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 132084 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 132459 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 132209 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 131959 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 133208 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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33426 | 3' | -62.5 | NC_007605.1 | + | 132334 | 0.66 | 0.643898 |
Target: 5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3' miRNA: 3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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