miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33426 3' -62.5 NC_007605.1 + 132334 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 132833 0.66 0.643898
Target:  5'- cGGACccaccGGCGGCCgC-CCGgcUGCCCCc- -3'
miRNA:   3'- -CCUGa----CUGCCGGgGaGGC--ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 3015 0.66 0.63416
Target:  5'- -aGCUGuucuCGGCCCUguacCCG-GCCCCg- -3'
miRNA:   3'- ccUGACu---GCCGGGGa---GGCaCGGGGau -5'
33426 3' -62.5 NC_007605.1 + 39383 0.66 0.624419
Target:  5'- uGAC-GACGGCCUCUaCCagGUGCCCa-- -3'
miRNA:   3'- cCUGaCUGCCGGGGA-GG--CACGGGgau -5'
33426 3' -62.5 NC_007605.1 + 8873 0.66 0.624419
Target:  5'- aGGGCcg--GGCCCCggCCGUGUgCCUGa -3'
miRNA:   3'- -CCUGacugCCGGGGa-GGCACGgGGAU- -5'
33426 3' -62.5 NC_007605.1 + 12135 0.67 0.614684
Target:  5'- cGGCUGGggcacgagagccCGGCCCgUCCG-GCgCCCUc -3'
miRNA:   3'- cCUGACU------------GCCGGGgAGGCaCG-GGGAu -5'
33426 3' -62.5 NC_007605.1 + 36790 0.67 0.614684
Target:  5'- cGACUacGAgGGCCUCUggcacgCCGUGgCCCUGa -3'
miRNA:   3'- cCUGA--CUgCCGGGGA------GGCACgGGGAU- -5'
33426 3' -62.5 NC_007605.1 + 134394 0.67 0.614684
Target:  5'- uGGACUuGCccuuGCCCCUgcCCcUGCCCCUGc -3'
miRNA:   3'- -CCUGAcUGc---CGGGGA--GGcACGGGGAU- -5'
33426 3' -62.5 NC_007605.1 + 39665 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 39540 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 39415 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 39290 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 39165 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 39040 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 38791 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 38666 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 38416 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 38291 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 38541 0.67 0.605932
Target:  5'- gGGGCagccgGGCGGCCgCCgguggguccgcugggCCGcUGCCCCg- -3'
miRNA:   3'- -CCUGa----CUGCCGG-GGa--------------GGC-ACGGGGau -5'
33426 3' -62.5 NC_007605.1 + 169070 0.67 0.599135
Target:  5'- uGGcCUgGAUGGUCCCcgcggcaugaaugaaUCCGUGCUCCa- -3'
miRNA:   3'- -CCuGA-CUGCCGGGG---------------AGGCACGGGGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.