miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33426 5' -59.9 NC_007605.1 + 135185 0.66 0.737002
Target:  5'- gUgGUGGGgGCGGG-GGUgGUGguGAa -3'
miRNA:   3'- aAgUACCCgUGUCCgCCGgCACguCU- -5'
33426 5' -59.9 NC_007605.1 + 65516 0.66 0.716586
Target:  5'- -cCAUGGGCcucgggguGCAGGgccUGGCCGaugucuuUGCGGAc -3'
miRNA:   3'- aaGUACCCG--------UGUCC---GCCGGC-------ACGUCU- -5'
33426 5' -59.9 NC_007605.1 + 162023 0.66 0.716586
Target:  5'- -aCAUGcGCACAGGCagccgccGGCCGUacacccggcccuGCAGGg -3'
miRNA:   3'- aaGUACcCGUGUCCG-------CCGGCA------------CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 6452 0.66 0.704776
Target:  5'- uUUCAUGcGGCACAGGUaguuGCCGUcaugggagauguugGCAGc -3'
miRNA:   3'- -AAGUAC-CCGUGUCCGc---CGGCA--------------CGUCu -5'
33426 5' -59.9 NC_007605.1 + 168674 0.67 0.687901
Target:  5'- uUUCGgcguagGGGCACGGaGgGGCCGU-CAGu -3'
miRNA:   3'- -AAGUa-----CCCGUGUC-CgCCGGCAcGUCu -5'
33426 5' -59.9 NC_007605.1 + 50648 0.67 0.686904
Target:  5'- -cCAcGGGCGCAcGGggucgcagcccgaCGGCCGUGgGGAg -3'
miRNA:   3'- aaGUaCCCGUGU-CC-------------GCCGGCACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 156428 0.67 0.667885
Target:  5'- -gCAgGGGgGCAGGCGGCCcuacUGgGGAc -3'
miRNA:   3'- aaGUaCCCgUGUCCGCCGGc---ACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 153359 0.67 0.667885
Target:  5'- -gCAgGGGgGCAGGCGGCCcuacUGgGGAc -3'
miRNA:   3'- aaGUaCCCgUGUCCGCCGGc---ACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 159497 0.67 0.667885
Target:  5'- -gCAgGGGgGCAGGCGGCCcuacUGgGGAc -3'
miRNA:   3'- aaGUaCCCgUGUCCGCCGGc---ACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 147221 0.67 0.667885
Target:  5'- -gCAgGGGgGCAGGCGGCCcuacUGgGGAc -3'
miRNA:   3'- aaGUaCCCgUGUCCGCCGGc---ACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 144152 0.67 0.667885
Target:  5'- -gCAgGGGgGCAGGCGGCCcuacUGgGGAc -3'
miRNA:   3'- aaGUaCCCgUGUCCGCCGGc---ACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 141083 0.67 0.667885
Target:  5'- -gCAgGGGgGCAGGCGGCCcuacUGgGGAc -3'
miRNA:   3'- aaGUaCCCgUGUCCGCCGGc---ACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 138014 0.67 0.667885
Target:  5'- -gCAgGGGgGCAGGCGGCCcuacUGgGGAc -3'
miRNA:   3'- aaGUaCCCgUGUCCGCCGGc---ACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 154280 0.67 0.667885
Target:  5'- cUCccGGGCGCAGGCcGGCUagccuGUGCu-- -3'
miRNA:   3'- aAGuaCCCGUGUCCG-CCGG-----CACGucu -5'
33426 5' -59.9 NC_007605.1 + 150290 0.67 0.667885
Target:  5'- -gCAgGGGgGCAGGCGGCCcuacUGgGGAc -3'
miRNA:   3'- aaGUaCCCgUGUCCGCCGGc---ACgUCU- -5'
33426 5' -59.9 NC_007605.1 + 150081 0.67 0.667885
Target:  5'- uUUCAgUGGGcCGCAGGCGGCgGagGCu-- -3'
miRNA:   3'- -AAGU-ACCC-GUGUCCGCCGgCa-CGucu -5'
33426 5' -59.9 NC_007605.1 + 151313 0.67 0.661855
Target:  5'- -aCA-GGGCGCA-GCGGCCGccagacacugaaggGCAGAg -3'
miRNA:   3'- aaGUaCCCGUGUcCGCCGGCa-------------CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 169237 0.67 0.65783
Target:  5'- gUCGUuGGCgGCAGGCgggaGGCCGUGCuuuAGGg -3'
miRNA:   3'- aAGUAcCCG-UGUCCG----CCGGCACG---UCU- -5'
33426 5' -59.9 NC_007605.1 + 169468 0.67 0.647756
Target:  5'- ----gGGGCAUGGGgGGCCGcGCAu- -3'
miRNA:   3'- aaguaCCCGUGUCCgCCGGCaCGUcu -5'
33426 5' -59.9 NC_007605.1 + 154472 0.68 0.601376
Target:  5'- -gCAUGGGCAggauaaaguuuuccuUuuGGGCGGCCGccaggagGCAGGa -3'
miRNA:   3'- aaGUACCCGU---------------G--UCCGCCGGCa------CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.