miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33426 5' -59.9 NC_007605.1 + 169995 0.68 0.587322
Target:  5'- aUCGgggggugGGGCAUGGGgGGCCGcGCAu- -3'
miRNA:   3'- aAGUa------CCCGUGUCCgCCGGCaCGUcu -5'
33426 5' -59.9 NC_007605.1 + 39035 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 39160 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 39285 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 39410 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 39535 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 39660 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 170524 0.69 0.567355
Target:  5'- -cCGUgGGGCAUGGGgGGCCGcGCAu- -3'
miRNA:   3'- aaGUA-CCCGUGUCCgCCGGCaCGUcu -5'
33426 5' -59.9 NC_007605.1 + 80563 0.68 0.57732
Target:  5'- ----gGGuGCACAGGUGGCCGUaGguGu -3'
miRNA:   3'- aaguaCC-CGUGUCCGCCGGCA-CguCu -5'
33426 5' -59.9 NC_007605.1 + 38786 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 38661 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 38536 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 61269 0.75 0.255796
Target:  5'- -gCcgGGGCcugccACAGGCGGCUGUaGCGGAc -3'
miRNA:   3'- aaGuaCCCG-----UGUCCGCCGGCA-CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 72682 0.72 0.359703
Target:  5'- -gCAUGcGGCGCAGGCaGGCCGUuaGGc -3'
miRNA:   3'- aaGUAC-CCGUGUCCG-CCGGCAcgUCu -5'
33426 5' -59.9 NC_007605.1 + 38911 0.71 0.417368
Target:  5'- cUCcggGGGCAgCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU-GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 151065 0.7 0.508697
Target:  5'- --gAUGGGCuCAGGCGGCCc--CAGAc -3'
miRNA:   3'- aagUACCCGuGUCCGCCGGcacGUCU- -5'
33426 5' -59.9 NC_007605.1 + 170654 0.69 0.518312
Target:  5'- cUCcgGGGCuGCGGGCGGUgGauggcgGCGGAc -3'
miRNA:   3'- aAGuaCCCG-UGUCCGCCGgCa-----CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 123644 0.69 0.527998
Target:  5'- ----aGGGUAUGGGCGGgUGUGUGGAg -3'
miRNA:   3'- aaguaCCCGUGUCCGCCgGCACGUCU- -5'
33426 5' -59.9 NC_007605.1 + 38286 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5'
33426 5' -59.9 NC_007605.1 + 38411 0.69 0.527998
Target:  5'- cUCcggGGGCAgcCGGGCGGCCGccgGUGGGu -3'
miRNA:   3'- aAGua-CCCGU--GUCCGCCGGCa--CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.