miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33428 3' -44.1 NC_007605.1 + 111949 0.66 1
Target:  5'- cGCAGu---GGGUAGCAgaAUAggGCCCc -3'
miRNA:   3'- -UGUCuaauCCUAUCGUa-UAUgaUGGG- -5'
33428 3' -44.1 NC_007605.1 + 156578 0.66 1
Target:  5'- cUAGGUUGGuGAUGGacugacccacGCUACCCa -3'
miRNA:   3'- uGUCUAAUC-CUAUCguaua-----UGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 164090 0.67 0.999999
Target:  5'- cACGGAcccGGcUGGCucugGCUGCCCa -3'
miRNA:   3'- -UGUCUaauCCuAUCGuauaUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 71855 0.67 0.999999
Target:  5'- -aAGAUgAGGcaGGCuucGUGUGCUGCCUg -3'
miRNA:   3'- ugUCUAaUCCuaUCG---UAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 70604 0.67 0.999998
Target:  5'- gUAGGcUGGGGcuacugccGCAUAUGCUGCCa -3'
miRNA:   3'- uGUCUaAUCCUau------CGUAUAUGAUGGg -5'
33428 3' -44.1 NC_007605.1 + 9023 0.67 0.999998
Target:  5'- --------cGAUAGCAUAUGCUuCCCg -3'
miRNA:   3'- ugucuaaucCUAUCGUAUAUGAuGGG- -5'
33428 3' -44.1 NC_007605.1 + 46733 0.67 0.999998
Target:  5'- cCAGAg-AGGcgGGCAUcaaguuugagGUGCUACUCg -3'
miRNA:   3'- uGUCUaaUCCuaUCGUA----------UAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 62819 0.67 0.999998
Target:  5'- cACAGug-GGGGUGGCAagcccgggagagACUGCUCa -3'
miRNA:   3'- -UGUCuaaUCCUAUCGUaua---------UGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 31285 0.67 0.999998
Target:  5'- gGCAGGagAGGcggggGGUAUGUGCUGCg- -3'
miRNA:   3'- -UGUCUaaUCCua---UCGUAUAUGAUGgg -5'
33428 3' -44.1 NC_007605.1 + 160255 0.67 0.999998
Target:  5'- cGCGGGUcUGGGAUGGgAcuUACgcCCCg -3'
miRNA:   3'- -UGUCUA-AUCCUAUCgUauAUGauGGG- -5'
33428 3' -44.1 NC_007605.1 + 12953 0.67 0.999996
Target:  5'- uCGGcgUAGGGUgcuaAGCGUGUcguGCUGCUa -3'
miRNA:   3'- uGUCuaAUCCUA----UCGUAUA---UGAUGGg -5'
33428 3' -44.1 NC_007605.1 + 68508 0.68 0.999993
Target:  5'- --cGAUUGcGGA-GGCG-GUGCUGCCCg -3'
miRNA:   3'- uguCUAAU-CCUaUCGUaUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 162555 0.68 0.99999
Target:  5'- ------cGGGuaGUAGUAUAUACUAUCCa -3'
miRNA:   3'- ugucuaaUCC--UAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 73360 0.68 0.99999
Target:  5'- -aAGcgUGGGggGGUAUGUGggACCCu -3'
miRNA:   3'- ugUCuaAUCCuaUCGUAUAUgaUGGG- -5'
33428 3' -44.1 NC_007605.1 + 149533 0.68 0.999985
Target:  5'- uUAGAaaUGGG--GGCGUGUGCUGCgCCa -3'
miRNA:   3'- uGUCUa-AUCCuaUCGUAUAUGAUG-GG- -5'
33428 3' -44.1 NC_007605.1 + 164101 0.68 0.999985
Target:  5'- -------uGGGUAGCAUAgGCUAUCCu -3'
miRNA:   3'- ugucuaauCCUAUCGUAUaUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 163685 0.68 0.999985
Target:  5'- -------uGGGUAGCAUAgGCUAUCCu -3'
miRNA:   3'- ugucuaauCCUAUCGUAUaUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 164011 0.68 0.999985
Target:  5'- -------uGGGUAGCAUAgGCUAUCCu -3'
miRNA:   3'- ugucuaauCCUAUCGUAUaUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 163775 0.68 0.999985
Target:  5'- -------uGGGUAGCAUAgGCUAUCCu -3'
miRNA:   3'- ugucuaauCCUAUCGUAUaUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 137451 0.68 0.99998
Target:  5'- aAguGAUUAGGAgcagGGCccaGUGC-ACCCa -3'
miRNA:   3'- -UguCUAAUCCUa---UCGua-UAUGaUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.