miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33428 3' -44.1 NC_007605.1 + 7465 1.15 0.02114
Target:  5'- uACAGAUUAGGAUAGCAUAUACUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7791 1.15 0.02114
Target:  5'- uACAGAUUAGGAUAGCAUAUACUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7911 1.11 0.03723
Target:  5'- uAUAGAUUAGGAUAGCAUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7821 1.11 0.03723
Target:  5'- uAUAGAUUAGGAUAGCAUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7645 1.11 0.03723
Target:  5'- uAUAGAUUAGGAUAGCAUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7585 1.11 0.03723
Target:  5'- uAUAGAUUAGGAUAGCAUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7495 1.11 0.03723
Target:  5'- uAUAGAUUAGGAUAGCAUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7675 1.05 0.079872
Target:  5'- uAUAGAUUAGGAUAGCAUAUGCUAUCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7941 1.01 0.129898
Target:  5'- uAUAGAUUAGGAUAGCcUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGuAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7851 1.01 0.129898
Target:  5'- uAUAGAUUAGGAUAGCcUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGuAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7615 1.01 0.129898
Target:  5'- uAUAGAUUAGGAUAGCcUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGuAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7525 1.01 0.129898
Target:  5'- uAUAGAUUAGGAUAGCcUAUGCUACCCa -3'
miRNA:   3'- -UGUCUAAUCCUAUCGuAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7550 0.99 0.166929
Target:  5'- nCAGAUauaaauUAGGAUAGCAUAUACUACCCa -3'
miRNA:   3'- uGUCUA------AUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7876 0.99 0.166929
Target:  5'- nCAGAUauaaauUAGGAUAGCAUAUACUACCCa -3'
miRNA:   3'- uGUCUA------AUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7726 0.99 0.176355
Target:  5'- cCAGAUauaaauUAGGAUAGCAUAUACUACCCu -3'
miRNA:   3'- uGUCUA------AUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7765 0.95 0.256359
Target:  5'- ---uAUUAGGAUAGCAUAUGCUACCCg -3'
miRNA:   3'- ugucUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 163889 0.95 0.28413
Target:  5'- -gAGAUUAGGGUAGUAUAUGCUAUCCu -3'
miRNA:   3'- ugUCUAAUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7437 0.92 0.390494
Target:  5'- uGCAug--AGGAUAGCAUAUGCUACCCg -3'
miRNA:   3'- -UGUcuaaUCCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 7995 0.9 0.447629
Target:  5'- cCAGAUauuuGGGUAGUAUAUGCUACCCa -3'
miRNA:   3'- uGUCUAau--CCUAUCGUAUAUGAUGGG- -5'
33428 3' -44.1 NC_007605.1 + 121515 0.84 0.728075
Target:  5'- ------aAGGAUAGCAUGUAUUACCCg -3'
miRNA:   3'- ugucuaaUCCUAUCGUAUAUGAUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.