miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33428 5' -48.5 NC_007605.1 + 162593 0.66 0.998476
Target:  5'- ---aAUAGCAUAUGUUACCCAa---- -3'
miRNA:   3'- auccUAUCGUAUACGAUGGGUcuaua -5'
33428 5' -48.5 NC_007605.1 + 56157 0.66 0.998476
Target:  5'- cGGGuauagAGCAUAUGCcgguggccgcgGCCCAGGUc- -3'
miRNA:   3'- aUCCua---UCGUAUACGa----------UGGGUCUAua -5'
33428 5' -48.5 NC_007605.1 + 134556 0.66 0.998154
Target:  5'- gAGGAcGGCGUcgGUGUUGCCCuGGg-- -3'
miRNA:   3'- aUCCUaUCGUA--UACGAUGGGuCUaua -5'
33428 5' -48.5 NC_007605.1 + 75770 0.66 0.998154
Target:  5'- gGGGGUGGCAUAUcugaagGC-AgCCAGGUGg -3'
miRNA:   3'- aUCCUAUCGUAUA------CGaUgGGUCUAUa -5'
33428 5' -48.5 NC_007605.1 + 71860 0.66 0.997776
Target:  5'- gAGGcaGGCuucGUGUGCUGCCUGGAa-- -3'
miRNA:   3'- aUCCuaUCG---UAUACGAUGGGUCUaua -5'
33428 5' -48.5 NC_007605.1 + 102062 0.67 0.996171
Target:  5'- gAGGGUGGcCAUgacacaugcaaugAUGCUggaaugGCCCAGGUAc -3'
miRNA:   3'- aUCCUAUC-GUA-------------UACGA------UGGGUCUAUa -5'
33428 5' -48.5 NC_007605.1 + 46738 0.68 0.99391
Target:  5'- gAGGcgGGCAUcaaguuugagGUGCUACUCGGGg-- -3'
miRNA:   3'- aUCCuaUCGUA----------UACGAUGGGUCUaua -5'
33428 5' -48.5 NC_007605.1 + 56032 0.68 0.99391
Target:  5'- aGGGAggcgaugaucUGGCAUGUG-UGCCgCAGGUGUg -3'
miRNA:   3'- aUCCU----------AUCGUAUACgAUGG-GUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 149539 0.68 0.990548
Target:  5'- aUGGG--GGCGUGUGCUGCgCCAGcagGUAa -3'
miRNA:   3'- -AUCCuaUCGUAUACGAUG-GGUC---UAUa -5'
33428 5' -48.5 NC_007605.1 + 137457 0.68 0.990548
Target:  5'- uUAGGAgcagGGCccaGUGC-ACCCAGGUGg -3'
miRNA:   3'- -AUCCUa---UCGua-UACGaUGGGUCUAUa -5'
33428 5' -48.5 NC_007605.1 + 164098 0.68 0.990548
Target:  5'- -cGGcUGGCucugGCUGCCCAGAUu- -3'
miRNA:   3'- auCCuAUCGuauaCGAUGGGUCUAua -5'
33428 5' -48.5 NC_007605.1 + 121515 0.69 0.985876
Target:  5'- aAGGAUAGCAUGUaUUACCCGccauccGGUAg -3'
miRNA:   3'- aUCCUAUCGUAUAcGAUGGGU------CUAUa -5'
33428 5' -48.5 NC_007605.1 + 9023 0.7 0.968324
Target:  5'- --cGAUAGCAUAUGCUuCCCguuGGGUAa -3'
miRNA:   3'- aucCUAUCGUAUACGAuGGG---UCUAUa -5'
33428 5' -48.5 NC_007605.1 + 163630 0.71 0.944029
Target:  5'- -uGGGUAGCAUAUaCUACCCAaAUAUc -3'
miRNA:   3'- auCCUAUCGUAUAcGAUGGGUcUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7737 0.72 0.933785
Target:  5'- uUAGGAUAGCAUAUaCUACCCu----- -3'
miRNA:   3'- -AUCCUAUCGUAUAcGAUGGGucuaua -5'
33428 5' -48.5 NC_007605.1 + 163656 0.75 0.813437
Target:  5'- -uGGAUAGCAUAUGCUAUCUaaucuauaucuGGGUAg -3'
miRNA:   3'- auCCUAUCGUAUACGAUGGG-----------UCUAUa -5'
33428 5' -48.5 NC_007605.1 + 164191 0.75 0.813437
Target:  5'- -cGGGUAGCAUAUGCUAUCCucauGcAUAUa -3'
miRNA:   3'- auCCUAUCGUAUACGAUGGGu---C-UAUA- -5'
33428 5' -48.5 NC_007605.1 + 50093 0.76 0.784399
Target:  5'- cGGGAUAGCGUGcGCUACC-GGAUGg -3'
miRNA:   3'- aUCCUAUCGUAUaCGAUGGgUCUAUa -5'
33428 5' -48.5 NC_007605.1 + 9097 0.76 0.774385
Target:  5'- cGGGA-AGCAUAUGCUACCCGuuUAg -3'
miRNA:   3'- aUCCUaUCGUAUACGAUGGGUcuAUa -5'
33428 5' -48.5 NC_007605.1 + 163715 0.76 0.764224
Target:  5'- -uGGGUAGCAUAUGCUAUCCuaaucuauaucuGGGUAg -3'
miRNA:   3'- auCCUAUCGUAUACGAUGGG------------UCUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.