miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33428 5' -48.5 NC_007605.1 + 50093 0.76 0.784399
Target:  5'- cGGGAUAGCGUGcGCUACC-GGAUGg -3'
miRNA:   3'- aUCCUAUCGUAUaCGAUGGgUCUAUa -5'
33428 5' -48.5 NC_007605.1 + 7709 0.95 0.089665
Target:  5'- -uGGGUAGUAUAUGCUACCCAGAUAUa -3'
miRNA:   3'- auCCUAUCGUAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7471 0.92 0.140927
Target:  5'- uUAGGAUAGCAUAUaCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGUAUAcGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7561 0.92 0.140927
Target:  5'- uUAGGAUAGCAUAUaCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGUAUAcGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7797 0.92 0.140927
Target:  5'- uUAGGAUAGCAUAUaCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGUAUAcGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7887 0.92 0.140927
Target:  5'- uUAGGAUAGCAUAUaCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGUAUAcGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7977 0.84 0.369664
Target:  5'- uUAGGAUA-CAUAUGCUAUCCAGAUAUu -3'
miRNA:   3'- -AUCCUAUcGUAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 8004 0.78 0.645967
Target:  5'- -uGGGUAGUAUAUGCUACCCAu---- -3'
miRNA:   3'- auCCUAUCGUAUACGAUGGGUcuaua -5'
33428 5' -48.5 NC_007605.1 + 9097 0.76 0.774385
Target:  5'- cGGGA-AGCAUAUGCUACCCGuuUAg -3'
miRNA:   3'- aUCCUaUCGUAUACGAUGGGUcuAUa -5'
33428 5' -48.5 NC_007605.1 + 7947 0.96 0.073305
Target:  5'- uUAGGAUAGCcUAUGCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGuAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7857 0.96 0.073305
Target:  5'- uUAGGAUAGCcUAUGCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGuAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7621 0.96 0.073305
Target:  5'- uUAGGAUAGCcUAUGCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGuAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7591 1.05 0.020708
Target:  5'- uUAGGAUAGCAUAUGCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGUAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7651 1.05 0.020708
Target:  5'- uUAGGAUAGCAUAUGCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGUAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7827 1.05 0.020708
Target:  5'- uUAGGAUAGCAUAUGCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGUAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7917 1.05 0.020708
Target:  5'- uUAGGAUAGCAUAUGCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGUAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7767 1.02 0.034267
Target:  5'- uUAGGAUAGCAUAUGCUACCCGGAUAc -3'
miRNA:   3'- -AUCCUAUCGUAUACGAUGGGUCUAUa -5'
33428 5' -48.5 NC_007605.1 + 7442 1.01 0.038556
Target:  5'- gAGGAUAGCAUAUGCUACCCGGAUAc -3'
miRNA:   3'- aUCCUAUCGUAUACGAUGGGUCUAUa -5'
33428 5' -48.5 NC_007605.1 + 7681 0.99 0.053242
Target:  5'- uUAGGAUAGCAUAUGCUAUCCAGAUAUu -3'
miRNA:   3'- -AUCCUAUCGUAUACGAUGGGUCUAUA- -5'
33428 5' -48.5 NC_007605.1 + 7531 0.96 0.073305
Target:  5'- uUAGGAUAGCcUAUGCUACCCAGAUAUa -3'
miRNA:   3'- -AUCCUAUCGuAUACGAUGGGUCUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.