miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33429 3' -47.3 NC_007605.1 + 77962 0.66 0.999851
Target:  5'- -gGGGUUGGGGUAGUCacUGCUGa-- -3'
miRNA:   3'- uaUCUAAUCCUAUCGGauACGAUggg -5'
33429 3' -47.3 NC_007605.1 + 89600 0.66 0.999851
Target:  5'- uUGGGUacccaGGuGAUGGCCgcgGCUGCCa -3'
miRNA:   3'- uAUCUAa----UC-CUAUCGGauaCGAUGGg -5'
33429 3' -47.3 NC_007605.1 + 42349 0.66 0.999851
Target:  5'- uUGGccu-GGAUGGCCUggugcAUGCaUGCCUg -3'
miRNA:   3'- uAUCuaauCCUAUCGGA-----UACG-AUGGG- -5'
33429 3' -47.3 NC_007605.1 + 154290 0.66 0.999851
Target:  5'- -cAGGcc-GGcUAGCCUGUGCUcuucuCCCg -3'
miRNA:   3'- uaUCUaauCCuAUCGGAUACGAu----GGG- -5'
33429 3' -47.3 NC_007605.1 + 78025 0.66 0.999851
Target:  5'- -gGGGUUGGGGUAGUCacUGCUGa-- -3'
miRNA:   3'- uaUCUAAUCCUAUCGGauACGAUggg -5'
33429 3' -47.3 NC_007605.1 + 78088 0.66 0.999851
Target:  5'- -gGGGUUGGGGUAGUCacUGCUGa-- -3'
miRNA:   3'- uaUCUAAUCCUAUCGGauACGAUggg -5'
33429 3' -47.3 NC_007605.1 + 78193 0.66 0.999851
Target:  5'- -gGGGUUGGGGUAGUCacUGCUGg-- -3'
miRNA:   3'- uaUCUAAUCCUAUCGGauACGAUggg -5'
33429 3' -47.3 NC_007605.1 + 78151 0.66 0.999851
Target:  5'- -gGGGUUGGGGUAGUCacUGCUGg-- -3'
miRNA:   3'- uaUCUAAUCCUAUCGGauACGAUggg -5'
33429 3' -47.3 NC_007605.1 + 80466 0.66 0.999807
Target:  5'- -------cGGAUGGCCUAUggGUUACCa -3'
miRNA:   3'- uaucuaauCCUAUCGGAUA--CGAUGGg -5'
33429 3' -47.3 NC_007605.1 + 160596 0.66 0.999807
Target:  5'- -gGGAaggAGGAUGGCCUccaGCUcgGCCa -3'
miRNA:   3'- uaUCUaa-UCCUAUCGGAua-CGA--UGGg -5'
33429 3' -47.3 NC_007605.1 + 148575 0.66 0.999739
Target:  5'- -gAGAUguucaGGGGUGGCCgguacccuacGCUGCCg -3'
miRNA:   3'- uaUCUAa----UCCUAUCGGaua-------CGAUGGg -5'
33429 3' -47.3 NC_007605.1 + 70603 0.66 0.999683
Target:  5'- uGUAGGcUGGGGcuacuGCCgcaUAUGCUGCCa -3'
miRNA:   3'- -UAUCUaAUCCUau---CGG---AUACGAUGGg -5'
33429 3' -47.3 NC_007605.1 + 34598 0.66 0.999683
Target:  5'- -gGGGUggAGGcUGcGCCUGaGCUGCCUg -3'
miRNA:   3'- uaUCUAa-UCCuAU-CGGAUaCGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 102054 0.67 0.999608
Target:  5'- -aGGGUgcagAGGGUGGCCaugacacaugcaaugAUGCUggaaugGCCCa -3'
miRNA:   3'- uaUCUAa---UCCUAUCGGa--------------UACGA------UGGG- -5'
33429 3' -47.3 NC_007605.1 + 50087 0.67 0.999599
Target:  5'- -aAGGcgcGGGAUAGCgUGcGCUACCg -3'
miRNA:   3'- uaUCUaa-UCCUAUCGgAUaCGAUGGg -5'
33429 3' -47.3 NC_007605.1 + 94710 0.67 0.999599
Target:  5'- -aGGGcUGGGuUGGCCUuuUGC-ACCCa -3'
miRNA:   3'- uaUCUaAUCCuAUCGGAu-ACGaUGGG- -5'
33429 3' -47.3 NC_007605.1 + 164131 0.67 0.999495
Target:  5'- -------uGGGUAGCaUAUGCUAUCCu -3'
miRNA:   3'- uaucuaauCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 163805 0.67 0.999495
Target:  5'- -------uGGGUAGCaUAUGCUAUCCu -3'
miRNA:   3'- uaucuaauCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 163715 0.67 0.999495
Target:  5'- -------uGGGUAGCaUAUGCUAUCCu -3'
miRNA:   3'- uaucuaauCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 163981 0.67 0.999495
Target:  5'- -------uGGGUAGCaUAUGCUAUCCu -3'
miRNA:   3'- uaucuaauCCUAUCGgAUACGAUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.