miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33429 3' -47.3 NC_007605.1 + 94 0.69 0.996423
Target:  5'- ------cAGGGUuGCCUGUGUcACCCa -3'
miRNA:   3'- uaucuaaUCCUAuCGGAUACGaUGGG- -5'
33429 3' -47.3 NC_007605.1 + 632 0.69 0.996423
Target:  5'- ------cAGGGUuGCCUGUGUcACCCa -3'
miRNA:   3'- uaucuaaUCCUAuCGGAUACGaUGGG- -5'
33429 3' -47.3 NC_007605.1 + 1154 0.69 0.996423
Target:  5'- ------cAGGGUuGCCUGUGUcACCCa -3'
miRNA:   3'- uaucuaaUCCUAuCGGAUACGaUGGG- -5'
33429 3' -47.3 NC_007605.1 + 1692 0.69 0.996423
Target:  5'- ------cAGGGUuGCCUGUGUcACCCa -3'
miRNA:   3'- uaucuaaUCCUAuCGGAUACGaUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7442 0.79 0.750073
Target:  5'- ------gAGGAUAGCaUAUGCUACCCg -3'
miRNA:   3'- uaucuaaUCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7467 0.81 0.631661
Target:  5'- -cAGAUUAGGAUAGCaUAUaCUACCCa -3'
miRNA:   3'- uaUCUAAUCCUAUCGgAUAcGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7495 0.98 0.082909
Target:  5'- uAUAGAUUAGGAUAGCaUAUGCUACCCa -3'
miRNA:   3'- -UAUCUAAUCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7525 1.12 0.012376
Target:  5'- uAUAGAUUAGGAUAGCCUAUGCUACCCa -3'
miRNA:   3'- -UAUCUAAUCCUAUCGGAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7555 0.71 0.980521
Target:  5'- uAUAaAUUAGGAUAGCaUAUaCUACCCa -3'
miRNA:   3'- -UAUcUAAUCCUAUCGgAUAcGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7585 0.98 0.082909
Target:  5'- uAUAGAUUAGGAUAGCaUAUGCUACCCa -3'
miRNA:   3'- -UAUCUAAUCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7615 1.12 0.012376
Target:  5'- uAUAGAUUAGGAUAGCCUAUGCUACCCa -3'
miRNA:   3'- -UAUCUAAUCCUAUCGGAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7645 0.98 0.082909
Target:  5'- uAUAGAUUAGGAUAGCaUAUGCUACCCa -3'
miRNA:   3'- -UAUCUAAUCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7675 0.93 0.171348
Target:  5'- uAUAGAUUAGGAUAGCaUAUGCUAUCCa -3'
miRNA:   3'- -UAUCUAAUCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7701 0.76 0.870407
Target:  5'- -cAGAUauuuGGGUAGUaUAUGCUACCCa -3'
miRNA:   3'- uaUCUAau--CCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7731 0.7 0.989661
Target:  5'- uAUAaAUUAGGAUAGCaUAUaCUACCCu -3'
miRNA:   3'- -UAUcUAAUCCUAUCGgAUAcGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7765 0.84 0.48202
Target:  5'- ---uAUUAGGAUAGCaUAUGCUACCCg -3'
miRNA:   3'- uaucUAAUCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7793 0.81 0.631661
Target:  5'- -cAGAUUAGGAUAGCaUAUaCUACCCa -3'
miRNA:   3'- uaUCUAAUCCUAUCGgAUAcGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7821 0.98 0.082909
Target:  5'- uAUAGAUUAGGAUAGCaUAUGCUACCCa -3'
miRNA:   3'- -UAUCUAAUCCUAUCGgAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7851 1.12 0.012376
Target:  5'- uAUAGAUUAGGAUAGCCUAUGCUACCCa -3'
miRNA:   3'- -UAUCUAAUCCUAUCGGAUACGAUGGG- -5'
33429 3' -47.3 NC_007605.1 + 7881 0.71 0.980521
Target:  5'- uAUAaAUUAGGAUAGCaUAUaCUACCCa -3'
miRNA:   3'- -UAUcUAAUCCUAUCGgAUAcGAUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.